PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G082200.1
Common NamePHAVU_002G082200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 508aa    MW: 56233.6 Da    PI: 9.5607
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G082200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00037452474123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp+C+k F++   L  H r+H
  Phvul.002G082200.1 452 HECPICNKIFRSGQALGGHKRSH 474
                         79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.46E-6836No hitNo description
Gene3DG3DSA:3.30.160.601.4E-4934IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.1381239IPR007087Zinc finger, C2H2
SMARTSM003550.141234IPR015880Zinc finger, C2H2-like
PfamPF139121.7E-61235IPR007087Zinc finger, C2H2
PROSITE patternPS0002801434IPR007087Zinc finger, C2H2
SMARTSM003551.6108130IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.39108135IPR007087Zinc finger, C2H2
SuperFamilySSF576673.29E-8109130No hitNo description
PfamPF139121.1E-4110132IPR007087Zinc finger, C2H2
PROSITE patternPS000280110130IPR007087Zinc finger, C2H2
SuperFamilySSF576673.29E-8447474No hitNo description
PfamPF139122.3E-11451474IPR007087Zinc finger, C2H2
SMARTSM003550.018452474IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.702452474IPR007087Zinc finger, C2H2
PROSITE patternPS000280454474IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MMSYQSMEER KFVCKYCSKR FPCGKSLGGH IRTHMMSENS ALGNAERNIA TNGMFKLNGG  60
GKRKRDSGSE ENGGGASRGN YNVIYGLREN PKKTTRFVHS NSSLQVDKFC KECGKGFFSL  120
KALCGHMACH SEKDKGANRF ESSSGGFSEK QKLVMDSQSD TETSTPRRSK RMRFKTLSSS  180
NNQAQSSVSE VEQGQEEVAR CLMMLSKDSS YKGRFALFTE SSDNNSVVLE AKSPSPETKV  240
TMMNSNGKNF MSSAYVEKKL EQPKDLKFKY AEVGYDSDNS DSGYFRYGPK EVDSTDSNNG  300
NSKNEAMSSK AGYLTGFEDY DVESRKVLSR GRSSSIEFKK FVLEDWENDR QDGGAARKFD  360
SKKFKKSNYD SLGQNLGGVS SRKIGNGFAN DKVNKYKCLT SDRDNGYDDS AYESDENSTD  420
TDSYPAPKAY RNRNLSGQKG KKKLKSKKSK AHECPICNKI FRSGQALGGH KRSHFIGGSE  480
ENTLVIRPSA PAVPCLIDLN LPAPVDE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G082200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157592.10.0hypothetical protein PHAVU_002G082200g
TrEMBLV7CL060.0V7CL06_PHAVU; Uncharacterized protein
STRINGXP_007157592.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.12e-82C2H2-like zinc finger protein