PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G079400.1
Common NamePHAVU_002G079400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 270aa    MW: 28890.2 Da    PI: 7.8002
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G079400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.9e-11152199455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Phvul.002G079400.1 152 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 199
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.38E-10146203No hitNo description
SuperFamilySSF474597.33E-18146216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828148198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-18148216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-8152199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10154204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MDPAAIINAA AAANTTSYNL SEIWHFPPPN VPDATAALGL SRAHFGHALP DFGPAPARDS  60
GPASIGPKKR RDAEQEESAK GVFTSNGVKE GGGGGDGKRV KTTGSHKSES AIGEGESSSG  120
KLAEQGGKPP SEPPSKQDYI HVRARRGQAT DSHSLAERAR REKISERMKI LQDLVPGCNK  180
VIGKALVLDE IINYIQSLQR QVEFLSMKLE AVNSRMPSGI EVFPPKDFDQ QTFDTTGIPF  240
ASQPTREYSR GSSPEWLHMQ VGSGFERAT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G079400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150434e-88AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157558.10.0hypothetical protein PHAVU_002G079400g
SwissprotQ69WS32e-74BH094_ORYSJ; Transcription factor BHLH094
TrEMBLV7CH720.0V7CH72_PHAVU; Uncharacterized protein
STRINGXP_007157558.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-81BIG PETAL P