PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G061000.2
Common NamePHAVU_002G061000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 339aa    MW: 39174.1 Da    PI: 7.3242
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G061000.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1806e-5671361129
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                         +ppGfrFhPtdeelv++yLkkkv++k++++ +vik+vd+yk+ePwdL++   + ++e++ewyfFs++dkky+tg+r+nratk+g+Wkatg+
  Phvul.002G061000.2   7 VPPGFRFHPTDEELVHYYLKKKVASKRIDI-DVIKDVDLYKIEPWDLQElckNGSHEQDEWYFFSHKDKKYPTGTRTNRATKAGFWKATGR 96 
                         69****************************.99**************953322223555******************************** PP

                 NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                         dk++++ k+ l+g++ktLvfykgrap+g+k+dW+mheyrle
  Phvul.002G061000.2  97 DKAIYC-KHCLTGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
                         ******.8999****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.14E-605156IPR003441NAC domain
PROSITE profilePS5100558.727156IPR003441NAC domain
PfamPF023651.3E-288135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MNTYSHVPPG FRFHPTDEEL VHYYLKKKVA SKRIDIDVIK DVDLYKIEPW DLQELCKNGS  60
HEQDEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YCKHCLTGMR KTLVFYKGRA  120
PNGQKSDWIM HEYRLETNEN GTPQEEGWVV CRVFKKRMTT VRKMGDYVSP CWYDDQVSFM  180
QELESPMRIS NPNAPNRDLY PCKKELELQF NIPHDAFLQL PQLEGPIVPQ SVASLSFSPF  240
VSYGYGCKNN GNALQSSSLT QEHRQQQSLQ FHYASNDQSM DNVMDWRVLD KFVANQLSHD  300
EHFSNVAEQI KLQANGSTKP ETGQEIASTS ISSCWIDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-49615714169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G061000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-133AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157329.10.0hypothetical protein PHAVU_002G061000g
RefseqXP_007157330.10.0hypothetical protein PHAVU_002G061000g
SwissprotQ9FWX21e-140NAC7_ARATH; NAC domain-containing protein 7
TrEMBLV7CGS50.0V7CGS5_PHAVU; Uncharacterized protein
STRINGXP_007157329.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.11e-131NAC 007
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]