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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Phvul.002G061000.1 |
Common Name | PHAVU_002G061000g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family |
NAC |
Protein Properties |
Length: 339aa MW: 39174.1 Da PI: 7.3242 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Phvul.002G061000.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 180 | 6e-56 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88
+ppGfrFhPtdeelv++yLkkkv++k++++ +vik+vd+yk+ePwdL++ + ++e++ewyfFs++dkky+tg+r+nratk+g+Wkatg+
Phvul.002G061000.1 7 VPPGFRFHPTDEELVHYYLKKKVASKRIDI-DVIKDVDLYKIEPWDLQElckNGSHEQDEWYFFSHKDKKYPTGTRTNRATKAGFWKATGR 96
69****************************.99**************953322223555******************************** PP
NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
dk++++ k+ l+g++ktLvfykgrap+g+k+dW+mheyrle
Phvul.002G061000.1 97 DKAIYC-KHCLTGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136
******.8999****************************85 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 339 aa
Download sequence Send
to blast |
MNTYSHVPPG FRFHPTDEEL VHYYLKKKVA SKRIDIDVIK DVDLYKIEPW DLQELCKNGS 60 HEQDEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YCKHCLTGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETNEN GTPQEEGWVV CRVFKKRMTT VRKMGDYVSP CWYDDQVSFM 180 QELESPMRIS NPNAPNRDLY PCKKELELQF NIPHDAFLQL PQLEGPIVPQ SVASLSFSPF 240 VSYGYGCKNN GNALQSSSLT QEHRQQQSLQ FHYASNDQSM DNVMDWRVLD KFVANQLSHD 300 EHFSNVAEQI KLQANGSTKP ETGQEIASTS ISSCWIDL*
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015043 | 1e-133 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |