PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Phvul.002G061000.1 | ||||||||
Common Name | PHAVU_002G061000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 339aa MW: 39174.1 Da PI: 7.3242 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 180 | 6e-56 | 7 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 +ppGfrFhPtdeelv++yLkkkv++k++++ +vik+vd+yk+ePwdL++ + ++e++ewyfFs++dkky+tg+r+nratk+g+Wkatg+ Phvul.002G061000.1 7 VPPGFRFHPTDEELVHYYLKKKVASKRIDI-DVIKDVDLYKIEPWDLQElckNGSHEQDEWYFFSHKDKKYPTGTRTNRATKAGFWKATGR 96 69****************************.99**************953322223555******************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 dk++++ k+ l+g++ktLvfykgrap+g+k+dW+mheyrle Phvul.002G061000.1 97 DKAIYC-KHCLTGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 136 ******.8999****************************85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.14E-60 | 5 | 156 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.72 | 7 | 156 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-28 | 8 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 339 aa Download sequence Send to blast |
MNTYSHVPPG FRFHPTDEEL VHYYLKKKVA SKRIDIDVIK DVDLYKIEPW DLQELCKNGS 60 HEQDEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKAI YCKHCLTGMR KTLVFYKGRA 120 PNGQKSDWIM HEYRLETNEN GTPQEEGWVV CRVFKKRMTT VRKMGDYVSP CWYDDQVSFM 180 QELESPMRIS NPNAPNRDLY PCKKELELQF NIPHDAFLQL PQLEGPIVPQ SVASLSFSPF 240 VSYGYGCKNN GNALQSSSLT QEHRQQQSLQ FHYASNDQSM DNVMDWRVLD KFVANQLSHD 300 EHFSNVAEQI KLQANGSTKP ETGQEIASTS ISSCWIDL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-49 | 6 | 157 | 14 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Phvul.002G061000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 1e-133 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_007157329.1 | 0.0 | hypothetical protein PHAVU_002G061000g | ||||
Refseq | XP_007157330.1 | 0.0 | hypothetical protein PHAVU_002G061000g | ||||
Swissprot | Q9FWX2 | 1e-140 | NAC7_ARATH; NAC domain-containing protein 7 | ||||
TrEMBL | V7CGS5 | 0.0 | V7CGS5_PHAVU; Uncharacterized protein | ||||
STRING | XP_007157329.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1269 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G12260.1 | 1e-131 | NAC 007 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Phvul.002G061000.1 |
Entrez Gene | 18637103 |
Publications ? help Back to Top | |||
---|---|---|---|
|