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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Phvul.002G056300.1 |
Common Name | PHAVU_002G056300g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family |
HD-ZIP |
Protein Properties |
Length: 291aa MW: 32637.6 Da PI: 7.5729 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Phvul.002G056300.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 57.7 | 2e-18 | 127 | 181 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++k+q +Lee F+++++++ +++ LAk+lgL rqV vWFqNrRa+ k
Phvul.002G056300.1 127 RKKLRLSKDQSIILEESFKEHSTLNPKQKLALAKQLGLRARQVEVWFQNRRARTK 181
677889***********************************************98 PP
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2 | HD-ZIP_I/II | 124.7 | 4.2e-40 | 127 | 216 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
+kk+rlsk+q+ +LEesF+e+++L+p++K +la++Lgl++rqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
Phvul.002G056300.1 127 RKKLRLSKDQSIILEESFKEHSTLNPKQKLALAKQLGLRARQVEVWFQNRRARTKLKQTEVDCEFLKRCCENLTEENRRLQKEVQELR-TL 216
69*************************************************************************************9.44 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009641 | Biological Process | shade avoidance |
GO:0009734 | Biological Process | auxin-activated signaling pathway |
GO:0009826 | Biological Process | unidimensional cell growth |
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 291 aa
Download sequence Send
to blast |
MTAEKEDLGL SLSLSFPHNA PTPLHLNLLS TSTYSSSPPS HNPHKPSWNQ PFTSSGEAGS 60 FLRGIDVNRL PSMLDCEEEA GVSSPNSTVS SVSEKRSERE ANGEEEHDTE RGCFRGISDE 120 EEGETCRKKL RLSKDQSIIL EESFKEHSTL NPKQKLALAK QLGLRARQVE VWFQNRRART 180 KLKQTEVDCE FLKRCCENLT EENRRLQKEV QELRTLKLSP QFYMHMTPPT TLTMCPSCER 240 VAVPPSSAVD AATRHHHVPQ THSRPFPIGP WATSAASISH RPFDALRPRS *
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 175 | 183 | RRARTKLKQ |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269|PubMed:12492842}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269|PubMed:12492842}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | X92489 | 0.0 | X92489.1 G.max mRNA for homeobox-leucine zipper protein. |