PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

ERF

Protein Properties

Length: 305aa MW: 33907.1 Da PI: 8.692

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.002G055800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	63.6	4.2e-20	167	217	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+++g r++lg+f ta eAaka+++a+ +l+g Phvul.002G055800.1 167 HYRGVRQRP-WGKFAAEIRDPNKRG--SRVWLGTFETALEAAKAYDRAAFRLRG 217 8******.******96655..***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	5.44E-31	166	225	No hit	No description
Gene3D	G3DSA:3.30.730.10	2.3E-32	166	226	IPR001471	AP2/ERF domain
Pfam	PF00847	5.1E-14	167	217	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	24.25	167	225	IPR001471	AP2/ERF domain
SMART	SM00380	3.0E-37	167	231	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	4.05E-22	167	226	IPR016177	DNA-binding domain
PRINTS	PR00367	1.5E-13	168	179	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.5E-13	207	227	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009409	Biological Process	response to cold
GO:0010200	Biological Process	response to chitin
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MANPNPLQLS ALNQIKLHLL GELSPLPLTP SSNLTTTNFS FLFQEPDPTS SQSSSLCSQS 60 STSNSSATLD NFFSDFFDFS PTSTQNQFPL FQIDSKPQIL DHQTPKPHPQ TSTSEFTFPN 120 TQDCKKPQPN RKPSLQISLP KKTEWIQFGE GEVAGKVAQK AAEEKKHYRG VRQRPWGKFA 180 AEIRDPNKRG SRVWLGTFET ALEAAKAYDR AAFRLRGSKA ILNFPLEAGA DNRKRQREEE 240 EPVPEVVKRE KIEDSDVTRI RDAPLTPSSW PGFWASDANG IFAVPPLSPL SPHPAMGYPQ 300 LMVV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	3e-31	166	226	1	61	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	4e-31	166	230	4	68	ATERF1
3gcc_A	4e-31	166	230	4	68	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269\|PubMed:10715325, ECO:0000269\|PubMed:9756931}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00549	DAP	Transfer from AT5G47230	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.002G055800.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269\|PubMed:10715325}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015043	0.0	AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007157260.1	0.0	hypothetical protein PHAVU_002G055800g
Swissprot	O80341	2e-63	EF102_ARATH; Ethylene-responsive transcription factor 5
TrEMBL	V7CGL0	0.0	V7CGL0_PHAVU; Uncharacterized protein
STRING	XP_007157260.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1085	34	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47230.1	2e-59	ethylene responsive element binding factor 5

Link Out ? help Back to Top
Phytozome	Phvul.002G055800.1
Entrez Gene	18637048

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]