PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G052100.1
Common NamePHAVU_002G052100g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 294aa    MW: 33366.2 Da    PI: 5.7376
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G052100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.33.7e-102132531055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r+RR+riN+++  L++l+P+      +K++ +++Le+Av+++k Lq
  Phvul.002G052100.1 213 RKRRERINERLRILQTLVPNG-----TKVDISTMLEEAVQHVKFLQ 253
                         9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-13203269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.31203252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-11209262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-11209258IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.03E-9212257No hitNo description
PfamPF000101.6E-7213253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
HPKNKQMEPI EEISQEWMSC HSEVYTEEEA EFMSQFFYER FNMETEAPNA NSIFFIQGSE  60
PCAHSTKYIF PTTNASNNLG HVFSLPGNDA KLMNENTDQE LGLGRENLAD MDLQAHKARQ  120
ILVSEPEKDN TRSMEKSEKR FRSSLEGPEN KRNVKSKKNP KPSSLRNTEE EATQTLSSCF  180
SDDESKDSRA MKSSGKSRSN RDAALDLQSA YARKRRERIN ERLRILQTLV PNGTKVDIST  240
MLEEAVQHVK FLQLQIKLLS SDDLWMYAPI AYNGMSIGPE LLTSTSPSNQ RNA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G052100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150433e-46AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007157214.10.0hypothetical protein PHAVU_002G052100g, partial
TrEMBLV7CIP00.0V7CIP0_PHAVU; Uncharacterized protein (Fragment)
STRINGXP_007157214.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.13e-38bHLH family protein