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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.002G039800.5 | ||||||||
Common Name | PHAVU_002G039800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | E2F/DP | ||||||||
Protein Properties | Length: 246aa MW: 27321.5 Da PI: 8.1829 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 88.2 | 5.7e-28 | 91 | 173 | 2 | 71 |
E2F_TDP 2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirwkg 71 ++++Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg Phvul.002G039800.5 91 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpsngastpdqqqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 173 689********...*****999*******************************************************.*******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF009404 | 4.3E-101 | 3 | 245 | IPR015648 | Transcription factor DP |
Gene3D | G3DSA:1.10.10.10 | 5.4E-47 | 86 | 179 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 2.4E-35 | 90 | 173 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 1.6E-25 | 92 | 173 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
SuperFamily | SSF46785 | 9.79E-22 | 93 | 174 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01138 | 9.6E-7 | 180 | 243 | IPR014889 | Transcription factor DP, C-terminal |
SuperFamily | SSF144074 | 3.92E-19 | 180 | 242 | No hit | No description |
Pfam | PF08781 | 6.2E-18 | 181 | 242 | IPR014889 | Transcription factor DP, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042023 | Biological Process | DNA endoreduplication | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MGIQTQKTFR EEEEEELPCR GTTISGQSMS TSRSVGSPSS RSEQTMATPA SDNTFLRLNN 60 LDIHGDDAGS QGAVASKKKK RGQRTVGGDK SGRGLRQFSM KVCEKVESKG RTTYNEVADE 120 LVAEFADPSN GASTPDQQQY DEKNIRRRVY DALNVLMAMD IISKDKKEIQ WKGLPRTSLS 180 DIEDLKTERQ GLRNRIEKKA SYLQELEDQY IGLQKLIQRN EQLYSSGNAP NGGVSLPFIL 240 VQHSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_B | 7e-40 | 84 | 178 | 1 | 93 | PROTEIN (TRANSCRIPTION FACTOR DP-2) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.002G039800.5 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093795 | 0.0 | BT093795.1 Soybean clone JCVI-FLGm-17D20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007157062.1 | 0.0 | hypothetical protein PHAVU_002G039800g | ||||
Swissprot | Q9FNY2 | 1e-125 | DPB_ARATH; Transcription factor-like protein DPB | ||||
TrEMBL | V7CJH4 | 0.0 | V7CJH4_PHAVU; Uncharacterized protein | ||||
STRING | XP_007157060.1 | 1e-177 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03415.1 | 1e-117 | Transcription factor DP |
Link Out ? help Back to Top | |
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Phytozome | Phvul.002G039800.5 |
Entrez Gene | 18636883 |