PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G027200.1
Common NamePHAVU_002G027200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family HD-ZIP
Protein Properties Length: 218aa    MW: 25136.2 Da    PI: 8.6147
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G027200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox611.9e-1956110357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
            Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                         k++++++eq++ Le+ F +++++  e++ +LA +lgL+ rqV vWFqNrRa++k+
  Phvul.002G027200.1  56 KKRKLSAEQVNLLEQNFGNEHKLESERKDKLALELGLDPRQVAVWFQNRRARWKN 110
                         56799************************************************95 PP
2HD-ZIP_I/II116.71.4e-3755147193
         HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                         +kkr+ls+eqv+lLE++F +e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y+ Lk++++a   e++rLe+ev +L+++l
  Phvul.002G027200.1  55 NKKRKLSAEQVNLLEQNFGNEHKLESERKDKLALELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKSHEATLLEKCRLETEVLKLKDQL 145
                         59****************************************************************************************9 PP

         HD-ZIP_I/II  92 ke 93 
                         +e
  Phvul.002G027200.1 146 SE 147
                         86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.16751111IPR001356Homeobox domain
SMARTSM003892.4E-1754115IPR001356Homeobox domain
SuperFamilySSF466893.59E-1855120IPR009057Homeodomain-like
PfamPF000461.4E-1656110IPR001356Homeobox domain
CDDcd000861.03E-1556112No hitNo description
Gene3DG3DSA:1.10.10.605.8E-2158118IPR009057Homeodomain-like
PRINTSPR000312.3E-58291IPR000047Helix-turn-helix motif
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
PRINTSPR000312.3E-591107IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MNHRPFQDHM MFISQLYPAD APYTQIIAQQ GESKKPKRRR SKKNKGGENG ASEANKKRKL  60
SAEQVNLLEQ NFGNEHKLES ERKDKLALEL GLDPRQVAVW FQNRRARWKN KKLEEEYSNL  120
KKSHEATLLE KCRLETEVLK LKDQLSEAAK EIQRLRESGD RVPSNSPSSS QSQQSQYMET  180
VDPPFYGVFG VDGYDDDVLY GPETQCMNAL EWINLYV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13542PKRRRSKK
23758RRRSKKNKGGENGASEANKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G027200.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156908.11e-162hypothetical protein PHAVU_002G027200g
SwissprotO232081e-67ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLV7CFD81e-160V7CFD8_PHAVU; Uncharacterized protein
STRINGXP_007156908.11e-161(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47893257
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.13e-54homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]