 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Phvul.002G004800.1 |
Common Name | PHAVU_002G004800g |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
|
Family |
ARR-B |
Protein Properties |
Length: 561aa MW: 62254.1 Da PI: 6.3608 |
Description |
ARR-B family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Phvul.002G004800.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | G2-like | 88.3 | 7e-28 | 315 | 369 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56
k +++WtpeLH++Fv+aveqL G+++A+P++ile+mkv+gLt+++v+SHLQkYR++
Phvul.002G004800.1 315 KMKVDWTPELHKKFVKAVEQL-GIDQAIPSRILEIMKVEGLTRHNVASHLQKYRIH 369
5689*****************.********************************86 PP
|
2 | Response_reg | 28.7 | 6.6e-11 | 20 | 126 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedale 88
vl+ d +++ + + + l+ +y +v + d eal + + +++ ++ ++ + + G+++l++ ++lp i+ + ++ +++ +
Phvul.002G004800.1 20 VLVLDGDRSSAAEIGEQLQAMDY-NVSIFYDENEALSAISSSPegFHVAIVEVSTSSsLGGFKFLENA----KDLPTIMTSKNQCLNTTMK 105
789999999999***********.***************888888*******9999988999988653....4799999999999****** PP
HHHTTESEEEESS--HHHHHH CS
Response_reg 89 alkaGakdflsKpfdpeelvk 109
++ +Ga +flsKp ++++l +
Phvul.002G004800.1 106 CIALGAVEFLSKPLSEDKLQN 126
****************99976 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 561 aa
Download sequence Send
to blast |
MVCTANDLQG WKDFPKGLRV LVLDGDRSSA AEIGEQLQAM DYNVSIFYDE NEALSAISSS 60 PEGFHVAIVE VSTSSSLGGF KFLENAKDLP TIMTSKNQCL NTTMKCIALG AVEFLSKPLS 120 EDKLQNIWQH VVHKAFNAGA NGLSESLKPV KESLESVLHL QTGNEQDKTH KRTMSIDLEN 180 VSKFGDDDKE QSVCDKYPAP STPQLKHGTR LLDDGDCHEQ TNFSTEKESG EHDGECKSVE 240 ASCENLNAES SPQPTEPEET LIKEEEDFAN GSKGERAVSP NLHNEKFLTN ADGHTSSKKT 300 GVLHDSCEIK ANRKKMKVDW TPELHKKFVK AVEQLGIDQA IPSRILEIMK VEGLTRHNVA 360 SHLQKYRIHK RQSAPGEEDR KWHNQRDAMQ RSFYLQRPIM AYPSYHSNQT LSPAPIYPMW 420 GQPGSQMAGV QMWGSPAYPL WHPTESWNWK PYPGMHVDAW GCPLFPPPQA PGFPYNQNIP 480 GLHTPKAVDY RFGMPRSSFE HHPAEEVVDK VVKEAINKPW LPLPLGLKAP CTDSVLAELS 540 KQGISSIPLG NKGSSAPKPC *
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |