PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.002G004800.1
Common NamePHAVU_002G004800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ARR-B
Protein Properties Length: 561aa    MW: 62254.1 Da    PI: 6.3608
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.002G004800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.37e-28315369156
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                         k +++WtpeLH++Fv+aveqL G+++A+P++ile+mkv+gLt+++v+SHLQkYR++
  Phvul.002G004800.1 315 KMKVDWTPELHKKFVKAVEQL-GIDQAIPSRILEIMKVEGLTRHNVASHLQKYRIH 369
                         5689*****************.********************************86 PP
2Response_reg28.76.6e-11201261109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.mdGlellkeireeepklpiivvtahgeeedale 88 
                         vl+ d +++ +  + + l+  +y +v  + d  eal  +  +   +++ ++ ++ +  + G+++l++     ++lp i+ + ++  +++ +
  Phvul.002G004800.1  20 VLVLDGDRSSAAEIGEQLQAMDY-NVSIFYDENEALSAISSSPegFHVAIVEVSTSSsLGGFKFLENA----KDLPTIMTSKNQCLNTTMK 105
                         789999999999***********.***************888888*******9999988999988653....4799999999999****** PP

                         HHHTTESEEEESS--HHHHHH CS
        Response_reg  89 alkaGakdflsKpfdpeelvk 109
                         ++ +Ga +flsKp ++++l +
  Phvul.002G004800.1 106 CIALGAVEFLSKPLSEDKLQN 126
                         ****************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521723.56E-1516134IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.5E-1616148No hitNo description
SMARTSM004487.3E-418128IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011020.419132IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.9E-820126IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.62E-821131No hitNo description
PROSITE profilePS5129415.958312371IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-27313372IPR009057Homeodomain-like
SuperFamilySSF466893.85E-18314371IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-25315370IPR006447Myb domain, plants
PfamPF002491.4E-7318367IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MVCTANDLQG WKDFPKGLRV LVLDGDRSSA AEIGEQLQAM DYNVSIFYDE NEALSAISSS  60
PEGFHVAIVE VSTSSSLGGF KFLENAKDLP TIMTSKNQCL NTTMKCIALG AVEFLSKPLS  120
EDKLQNIWQH VVHKAFNAGA NGLSESLKPV KESLESVLHL QTGNEQDKTH KRTMSIDLEN  180
VSKFGDDDKE QSVCDKYPAP STPQLKHGTR LLDDGDCHEQ TNFSTEKESG EHDGECKSVE  240
ASCENLNAES SPQPTEPEET LIKEEEDFAN GSKGERAVSP NLHNEKFLTN ADGHTSSKKT  300
GVLHDSCEIK ANRKKMKVDW TPELHKKFVK AVEQLGIDQA IPSRILEIMK VEGLTRHNVA  360
SHLQKYRIHK RQSAPGEEDR KWHNQRDAMQ RSFYLQRPIM AYPSYHSNQT LSPAPIYPMW  420
GQPGSQMAGV QMWGSPAYPL WHPTESWNWK PYPGMHVDAW GCPLFPPPQA PGFPYNQNIP  480
GLHTPKAVDY RFGMPRSSFE HHPAEEVVDK VVKEAINKPW LPLPLGLKAP CTDSVLAELS  540
KQGISSIPLG NKGSSAPKPC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A8e-17320369655Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.002G004800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156636.10.0hypothetical protein PHAVU_002G004800g
RefseqXP_007156637.10.0hypothetical protein PHAVU_002G004800g
SwissprotQ6LA431e-137APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLV7CH790.0V7CH79_PHAVU; Uncharacterized protein
STRINGXP_007156636.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35663465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-126ARR-B family protein
Publications ? help Back to Top
  1. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]