PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G258000.1
Common NamePHAVU_001G258000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ARR-B
Protein Properties Length: 556aa    MW: 62687.7 Da    PI: 6.0154
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G258000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.12.2e-24199252155
             G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                         k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  Phvul.001G258000.1 199 KARVVWSVDLHQKFVKAVNQI-GFDKVGPKKILDLMNVPWLTRENVASHLQKYRL 252
                         68*******************.9*******************************8 PP
2Response_reg82.31.6e-27191271109
                         EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
        Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                         vl+vdD+p+ +++l+++l+k +y ev+++  ++ al+ll+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + 
  Phvul.001G258000.1  19 VLVVDDDPTWLKILEKMLKKCNY-EVTTCCLARHALNLLRERKdgYDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSVDGETSRVMKG 107
                         89*********************.***************999999**********************6644.8****************** PP

                         HHTTESEEEESS--HHHHHH CS
        Response_reg  90 lkaGakdflsKpfdpeelvk 109
                         ++ Ga d+l Kp+ ++el++
  Phvul.001G258000.1 108 VQHGACDYLLKPIRMKELRN 127
                         *****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363924.2E-1462521IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23006.2E-4416153No hitNo description
SuperFamilySSF521721.57E-3516145IPR011006CheY-like superfamily
SMARTSM004485.6E-3217129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.16818133IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.3E-2419128IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.83E-3020132No hitNo description
SuperFamilySSF466891.15E-16197254IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-27197256IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-21199252IPR006447Myb domain, plants
PfamPF002491.7E-7201251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MDNGCFSSPR RDFPAGLRVL VVDDDPTWLK ILEKMLKKCN YEVTTCCLAR HALNLLRERK  60
DGYDIVISDV NMPDMDGFKL LEHVGLEMDL PVIMMSVDGE TSRVMKGVQH GACDYLLKPI  120
RMKELRNIWQ HVYRKRIHEA KEFESFESFE SIHLMTNGSE LSDEGNLFAV EDVTSTKKRK  180
DADNKHDDKE CMDPSSTKKA RVVWSVDLHQ KFVKAVNQIG FDKVGPKKIL DLMNVPWLTR  240
ENVASHLQKY RLYLIRIQKE NDRRSSSSGM KHSDFPSKDL GSFGFQNPVN KQQNDVSIDS  300
YNYSDGSLQL QNVENKSHEG DKGTVSQFTI AKKGRPLRES SRVGLQQPFD CSMPTQYSWT  360
EVPHTQLKEE HKSLVHLEDS FNQMPLQGKQ HPIQVDQSQS VASISSVPSI REEGVAACIE  420
AKPLFSDFKN DQSSSVNSIG NAVDTFPIQP GSLVMNAQSL ASSTTNSGLK AHGYNNLSCI  480
SDLEIYQRNL LLGASAPLDE DLHFHWLQGE CYNMNFGLQN IGMPEYYDPG LIAEAPSHLY  540
DSSDYSVMDQ GLFIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-17195257163ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G258000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163714.10.0hypothetical protein PHAVU_001G258000g
TrEMBLV7D2080.0V7D208_PHAVU; Two-component response regulator
STRINGXP_007163714.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-124response regulator 11