PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G249300.1
Common NamePHAVU_001G249300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bZIP
Protein Properties Length: 363aa    MW: 40912.6 Da    PI: 8.6167
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G249300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.22.7e-1176107334
                         XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
              bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeek 34 
                          +k +rr+++NReAAr+sR+RKka++++Le  
  Phvul.001G249300.1  76 TDKIQRRLAQNREAARKSRLRKKAYVQQLESS 107
                         7899*************************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.3E-870119No hitNo description
SMARTSM003387.5E-774134IPR004827Basic-leucine zipper domain
PfamPF001703.6E-876111IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.09476120IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.31E-778119No hitNo description
CDDcd147081.45E-2178130No hitNo description
PROSITE patternPS0003608196IPR004827Basic-leucine zipper domain
PfamPF141444.9E-32164238IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MNSASPQFVS ARRMSVYDPI HQISMWGEGF KSNGNLSASM PLIDDADMKL DSQSEDASHG  60
ILGAPSKYDQ EANKPTDKIQ RRLAQNREAA RKSRLRKKAY VQQLESSRLK LMQLEQELER  120
ARHQGMYIGG GLDSNHMGFS GSVNSGITTF EMEYGHWVNE QNRQITELRT ALNAHIGDIE  180
LRILVDGMMN HYAEIFRMKS AAAKADVFYV MSGMWKTTAE RFFLWIGGFR PSELLKVLGP  240
LIEPLTEKQR LDIYNLGQSC QQAEDALSQG MDKLRHTLAD SVAAGQFMEG TYIPQMTSAM  300
EKLEALVSFV NQADHLRQGT LQQMSRILTI RQAARCLLAL GEYFQRLRAL SSLWSNRPRE  360
PA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00502DAPTransfer from AT5G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G249300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4026070.0AF402607.1 Phaseolus vulgaris TGA-type basic leucine zipper protein TGA1.1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163615.10.0hypothetical protein PHAVU_001G249300g
RefseqXP_007163616.10.0hypothetical protein PHAVU_001G249300g
SwissprotQ391620.0TGA4_ARATH; Transcription factor TGA4
TrEMBLQ93XA20.0Q93XA2_PHAVU; TGA-type basic leucine zipper protein TGA1.1
STRINGXP_007163615.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109634104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10030.20.0TGACG motif-binding factor 4
Publications ? help Back to Top
  1. Tucker ML,Whitelaw CA,Lyssenko NN,Nath P
    Functional analysis of regulatory elements in the gene promoter for an abscission-specific cellulase from bean and isolation, expression, and binding affinity of three TGA-type basic leucine zipper transcription factors.
    Plant Physiol., 2002. 130(3): p. 1487-96
    [PMID:12428013]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Canales J,Contreras-López O,Álvarez JM,Gutiérrez RA
    Nitrate induction of root hair density is mediated by TGA1/TGA4 and CPC transcription factors in Arabidopsis thaliana.
    Plant J., 2017. 92(2): p. 305-316
    [PMID:28771873]