PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.001G245800.1 | ||||||||
Common Name | PHAVU_001G245800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | LBD | ||||||||
Protein Properties | Length: 182aa MW: 20322.3 Da PI: 6.6496 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 140.7 | 4.9e-44 | 22 | 121 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +Ca+Ck+lrr+C+kdC++apyfp+++p+kfa vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+++l+ Phvul.001G245800.1 22 PCASCKLLRRRCTKDCIFAPYFPSNDPQKFALVHKVFGASNVSKMLQELPIQQRADAVSSLVYEAHARVRDPVYGCVGAISYLQNQVSELQ 112 7****************************************************************************************** PP DUF260 92 aelallkee 100 +la++++e Phvul.001G245800.1 113 MQLAVAQAE 121 ****99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.757 | 21 | 122 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-43 | 22 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MLLSFYSQTK QGICNQMAGN SPCASCKLLR RRCTKDCIFA PYFPSNDPQK FALVHKVFGA 60 SNVSKMLQEL PIQQRADAVS SLVYEAHARV RDPVYGCVGA ISYLQNQVSE LQMQLAVAQA 120 EILCIQMQQE PVMPNPEMEN PDHKSYLLHN ELPQFLNYAS SSNVIYDAVT RESIYGHDLV 180 S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-47 | 18 | 123 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-47 | 18 | 123 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.001G245800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-170 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007163576.1 | 1e-133 | hypothetical protein PHAVU_001G245800g | ||||
Swissprot | Q8LBW3 | 2e-71 | LBD12_ARATH; LOB domain-containing protein 12 | ||||
TrEMBL | V7D211 | 1e-132 | V7D211_PHAVU; Uncharacterized protein | ||||
STRING | XP_007163576.1 | 1e-133 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1664 | 34 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30130.1 | 1e-68 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.001G245800.1 |
Entrez Gene | 18642448 |
Publications ? help Back to Top | |||
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