PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.001G244700.1

Common Name

PHAVU_001G244700g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

LBD

Protein Properties

Length: 176aa MW: 19637.5 Da PI: 7.4174

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.001G244700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.3	1.4e-39	11	110	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+l+r+C+++C++apyf +++ kkfa vhk+FGasnv+k+l +++ee+red+++sl+yeAear+rdPvyG++g i lq+++ +l+ Phvul.001G244700.1 11 SCAACKLLKRRCVPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVSEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQ 101 6**************************************************************************************** PP DUF260 92 aelallkee 100 ++la +k++ Phvul.001G244700.1 102 HDLAIAKDR 110 *999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.133	10	111	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-38	11	108	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MKGYEPRSSS SCAACKLLKR RCVPNCIFAP YFRSDECKKF AKVHKVFGAS NVSKILIEVS 60 EEQREDTVNS LAYEAEARLR DPVYGCIGAI ALLQRKMVEL QHDLAIAKDR LARCHAAATV 120 LPSPDILHAH VSLPPFPDFC TSSNDFNDIF CHSSSSQLLS RHETVDDFNQ IPYIF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-43	6	113	6	113	LOB family transfactor Ramosa2.1
5ly0_B	2e-43	6	113	6	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.001G244700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007163564.1	1e-127	hypothetical protein PHAVU_001G244700g
Refseq	XP_027915717.1	1e-127	LOB domain-containing protein 21-like
Swissprot	Q9SRL8	3e-61	LBD21_ARATH; LOB domain-containing protein 21
TrEMBL	A0A4D6MCS3	1e-126	A0A4D6MCS3_VIGUN; Carbamoyl-phosphate synthase large subunit
TrEMBL	V7D1K4	1e-126	V7D1K4_PHAVU; Uncharacterized protein
STRING	XP_007163564.1	1e-127	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5944	33	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G11090.1	1e-63	LOB domain-containing protein 21

Link Out ? help Back to Top
Phytozome	Phvul.001G244700.1
Entrez Gene	18642436

Publications ? help Back to Top
Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing. Plant Physiol., 2007. 144(1): p. 32-42 [PMID:17351049]