PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.001G226500.1 | ||||||||
Common Name | PHAVU_001G226500g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | GATA | ||||||||
Protein Properties | Length: 107aa MW: 11956 Da PI: 9.8254 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 60.7 | 1.8e-19 | 19 | 53 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C+ttkTplWR gp g+ktLCnaCG++yrk+g+ Phvul.001G226500.1 19 CADCKTTKTPLWRGGPAGPKTLCNACGIRYRKRGS 53 ********************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 12.888 | 13 | 52 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.6E-14 | 13 | 64 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.2E-15 | 14 | 53 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 2.14E-13 | 16 | 53 | No hit | No description |
Pfam | PF00320 | 3.7E-17 | 19 | 53 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 5.81E-13 | 19 | 54 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 19 | 44 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
MMDLKEWSSS ELNQNKKCCA DCKTTKTPLW RGGPAGPKTL CNACGIRYRK RGSCSRKREE 60 VVVLHRTSSV VKKQSWKMLG EEEQAAVCLM ALSCGFLPFL HLPHSR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.001G226500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 2e-84 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007163338.1 | 6e-74 | hypothetical protein PHAVU_001G226500g | ||||
Swissprot | Q9FJ10 | 1e-25 | GAT16_ARATH; GATA transcription factor 16 | ||||
TrEMBL | V7CYU0 | 1e-72 | V7CYU0_PHAVU; Uncharacterized protein | ||||
STRING | XP_007163338.1 | 2e-73 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1569 | 32 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 1e-18 | GATA transcription factor 16 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.001G226500.1 |
Entrez Gene | 18642249 |
Publications ? help Back to Top | |||
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