PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G214400.1
Common NamePHAVU_001G214400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family WRKY
Protein Properties Length: 294aa    MW: 33508.4 Da    PI: 7.3796
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G214400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.43.5e-34160217259
                         --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dgy+WrKYGqK vk+s+fprsYYrCts +C+vkk+vers +dp++v++tYeg+H+h+
  Phvul.001G214400.1 160 EDGYRWRKYGQKAVKNSPFPRSYYRCTSVSCNVKKRVERSFTDPSIVVTTYEGQHTHP 217
                         8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381309.5E-1061293IPR017396PWRKY transcription factor, group IIc
Gene3DG3DSA:2.20.25.807.6E-35144219IPR003657WRKY domain
SuperFamilySSF1182901.96E-29151219IPR003657WRKY domain
PROSITE profilePS5081131.858154219IPR003657WRKY domain
SMARTSM007741.7E-40159218IPR003657WRKY domain
PfamPF031061.6E-26160217IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDNNKETMMM TMMMGVKKKE DHAIGSSSFH CNYPFLDFSE EKSSLGFMEL LGVQEYSPLL  60
DLPLGSNMAV PQTSDLKEPP QTKKDWSEVT NQQPATPNSS SISSLSSEAL NDEQQNRTVD  120
QTHDEHQKTK EQLKAKKTNQ KRQREPRFAF MTKSEVDHLE DGYRWRKYGQ KAVKNSPFPR  180
SYYRCTSVSC NVKKRVERSF TDPSIVVTTY EGQHTHPSPV LGRSNNFGSL MSGSENYMSQ  240
YYQQHHQQQL HVDALSSLGF LSPKNVTFPQ ETALLSDYGR LQDAVPSHMF KQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-28149220778Probable WRKY transcription factor 4
2lex_A2e-28149220778Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G214400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312300.0KT031230.1 Glycine max clone HN_CCL_159 WRKY transcription factor (Glyma03g37940.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007163195.10.0hypothetical protein PHAVU_001G214400g
SwissprotO229007e-61WRK23_ARATH; WRKY transcription factor 23
TrEMBLV7CYM00.0V7CYM0_PHAVU; WRKY transcription factor
STRINGXP_007163195.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.11e-61WRKY DNA-binding protein 23
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guo D,Qin G
    EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses.
    Plant Signal Behav, 2016. 11(3): p. e1150404
    [PMID:26914912]
  4. Prát T, et al.
    WRKY23 is a component of the transcriptional network mediating auxin feedback on PIN polarity.
    PLoS Genet., 2018. 14(1): p. e1007177
    [PMID:29377885]