PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G195800.1
Common NamePHAVU_001G195800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family TALE
Protein Properties Length: 680aa    MW: 73757.8 Da    PI: 7.1152
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G195800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.31.5e-093824191954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Phvul.001G195800.1 382 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 419
                         554459******************************88 PP
2BELL120.19.8e-39246317172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         erqe+q+kkakL+ +l+eV++rY+qy++q+++v+ssFe++ag+gsa+ Yt+lAl++iS++FrcLkdaia+q+
  Phvul.001G195800.1 246 ERQEIQMKKAKLIAMLDEVEQRYRQYHQQMEIVVSSFEQAAGIGSARTYTALALQTISKQFRCLKDAIAGQV 317
                         79*******************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.2E-61173315IPR006563POX domain
PfamPF075266.9E-48178314IPR006563POX domain
PROSITE profilePS5007112.195360423IPR001356Homeobox domain
CDDcd000862.26E-12363424No hitNo description
SMARTSM003895.3E-9363427IPR001356Homeobox domain
SuperFamilySSF466896.84E-17364430IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.8E-29366429IPR009057Homeodomain-like
PfamPF059202.8E-18380419IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MATYFHHGNS EIQSGAADGL QTLVLMNPGY IHYSDAPSQP PPSHAAGNLV FLNSAAVAGT  60
NSNNSFNPHA PPSHTQQFVG IPLSASQDLN HHSMHAHHDV SALHGFLPRM QYNHWNALDP  120
ASAARETPRA QQGLSLGLGS FREGQAPGMS GDDLRVSGGS PSSASGVTNN GASGIQSVLL  180
SSKYLKAAHE LLEEVVNVNN GTGTELGKKS GGQNKVIGES SAAGSGDGSV VGEGNGKRSS  240
ELSTAERQEI QMKKAKLIAM LDEVEQRYRQ YHQQMEIVVS SFEQAAGIGS ARTYTALALQ  300
TISKQFRCLK DAIAGQVRAA NKSLGEEDCF GGKIEGSRLK YVDHHLRQQR ALQQLGMIQH  360
NAWRPQRGLP ERSVSVLRAW LFEHFLHPYP KDSDKHMLAK QTGLTRSQVS NWFINARVRL  420
WKPMVEEMYL EEMKDHEQNG SEDKSSKSNE DSSTKMAAPP ERGPSNETEA KSFNSKQEVS  480
KSQNTAMVSV SRPSTSQLGG NVRNQSGFSF MGSSELEGIT QGSPKKARNH EMMHSPNSVP  540
SMNIDVKPNE ANNEQLSMKF GDDRQGRNES SFMVNQTNFI GGFGQYPIGD IGRFDAEQFA  600
PRFSGNGVSL TLGLDSLPGT HQTFLPNQNI QLGRSLDIGE PNEFGSINTS SPHSSAAYES  660
ISMQNPKRFA AQLLPDFVT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-16369427563Homeobox protein Meis2
3k2a_B3e-16369427563Homeobox protein Meis2
4xrs_A3e-16369426158Homeobox protein Meis1
4xrs_B3e-16369426158Homeobox protein Meis1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G195800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162972.10.0hypothetical protein PHAVU_001G195800g
SwissprotQ9SJ561e-178BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLV7D1A00.0V7D1A0_PHAVU; Uncharacterized protein
STRINGXP_007162972.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16273492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-163BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]