PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G187000.1
Common NamePHAVU_001G187000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family Trihelix
Protein Properties Length: 593aa    MW: 68096.1 Da    PI: 6.7692
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G187000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.69.6e-30138223187
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                         rW++qe+l+L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r  ++ +++++f+qlea
  Phvul.001G187000.1 138 RWPRQETLTLLEIRSRLDSKFKEANQKGPLWDEVSRIMsEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGR--QDGKHYRFFRQLEA 223
                         8*************************************999*****************************98..55667*******85 PP
2trihelix48.52.2e-15438520284
            trihelix   2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                         W+++e+  L ++r eme+r+ + g++++  Wee++ km+  g+ers+   kekwe+ +++ ++ k+g+kkr +e+ + c yfd+
  Phvul.001G187000.1 438 WPESEITRLQQLRAEMETRYMQsGCSEEIMWEEIATKMACFGYERSALVFKEKWESSSNYARNAKDGNKKR-KEDPRGCFYFDN 520
                         *******************98648**********************************************8.788899*99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.131131196IPR017877Myb-like domain
PfamPF138371.6E-20138224No hitNo description
CDDcd122031.01E-19138203No hitNo description
PfamPF138379.0E-9436520No hitNo description
PROSITE profilePS500905.366437495IPR017877Myb-like domain
CDDcd122037.83E-15438502No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MEMEDHHHHH HHHQHHDQQQ HQQQQQYAIT DLRQLMNGPR ATHFPSMPPQ PKAELFPGGH  60
SNLAATQHFE MMMFGRQVAD IMPRCLHDFA STDSATNNNN TNIAAATPTT TTSASTPPLS  120
CLEGETAGCI GGDASTGRWP RQETLTLLEI RSRLDSKFKE ANQKGPLWDE VSRIMSEEHG  180
YQRSGKKCRE KFENLYKYYK KTKEGKAGRQ DGKHYRFFRQ LEALYGENSN QTSVPETNFG  240
SSSLRFNANS HNPSQTNQEM FHSQKHCDSL SLTNSTDLDT SSSDDNDQNS TGGLKDNDST  300
EKRRKRLSGR SWKVKIKDFI DSQMRKLVEK QEEWLDKLTK TLEQKEKERV FREEEWRRQE  360
AVRLEREHKF WAKERAWIEA RDAALMEALQ KLTGNEMIKS TQSPEGRMVT GIQNHSENLN  420
EDGSEILNST TVRGAESWPE SEITRLQQLR AEMETRYMQS GCSEEIMWEE IATKMACFGY  480
ERSALVFKEK WESSSNYARN AKDGNKKRKE DPRGCFYFDN SEQSSLYNQG GAYCDINDQR  540
HERRLQNDGS SPSNSNVGNA VAGDNCFPFL MTESANLWEN YSLKVNKASQ NQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G187000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162858.10.0hypothetical protein PHAVU_001G187000g
TrEMBLV7CXE60.0V7CXE6_PHAVU; Uncharacterized protein
STRINGXP_007162858.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.11e-129Trihelix family protein