PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.001G186700.1

Common Name

PHAVU_001G186700g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

C2H2

Protein Properties

Length: 1027aa MW: 112550 Da PI: 7.4522

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.001G186700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	879	901	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cg +F++ ++++rH+ H Phvul.001G186700.1 879 HHCKICGIRFKQEEQYQRHLEWH 901 68*****************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48464	6.02E-37	74	202	IPR008942	ENTH/VHS
PROSITE profile	PS51391	36.336	74	202	IPR006569	CID domain
Gene3D	G3DSA:1.25.40.90	5.1E-43	75	197	IPR008942	ENTH/VHS
SMART	SM00582	2.1E-43	77	199	IPR006569	CID domain
CDD	cd03562	4.60E-38	79	189	No hit	No description
Pfam	PF04818	2.8E-8	130	183	IPR006903	RNA polymerase II-binding domain
PROSITE profile	PS50157	9.058	879	906	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	881	901	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1027 aa Download sequence Send to blast
MNMESTRRSL DRSREPGPKK PRLIEELSAR QLPQRQQGSG AVASGVSARV RVNDRDSESS 60 DLGRGGGYHP QSPPHDELVA QYRTALAELT FNSKPIITNL TIIAGENQSA AKAIAATVCA 120 NIIEVPSDQK LPSLYLLDSI VKNIGRDYIK YFAVRLPEVF CKAYRQVDPI VHSSMKHLFG 180 TWKGVFPPQC LQMIEKELGF TPAVNGSASV SATVRSDLQS QRPPHSIHVN PKYLERQRLQ 240 QSSTSKGVVD DMTGALLNSN EESERPERVL GASRPWLDPR INMLNNQHAH RDAFNDSVPE 300 KSIDGSFGGS QYGSGISSNL VSGAGRTGTK LIDLGHEKTW FKTDGSEAET IPGQKNGFSL 360 KRSFSNREAP KSINLEAHRQ PRQSITNIRN NVMSGNWKNS EEEEFTWDEM NTGLTDHGPN 420 VSSNLSTDSW MTDDENLEGE DHLHILRPYG AKVDREISTV KKQLPGFGGH PPSSWQLQKH 480 HTIDKLNLKP GYSDGFVSTI SGLPANANSL PVKKGNQSFT SKAVVGMAKI VGQQFDGEIE 540 SPSGQSPLQR QSPSLPGTAY HPHSMQNLPE QEMPQNIRTS QFSGGPTSQH IRDRSPTLHP 600 IVQVGNMRRT QEKDMQGPLS SATKLQQQQL DFSQTEVSAK TKLPQSKTSL TKEVSEQSTK 660 NNLSSAAVKS GIIPKKSITS NLDPRKHLSK SGVQLPRSGR SSPTTIISSG SAVASPSLLD 720 PLHKDSSSVP KKPQGKAGQP PQKLSTQPPA SSNLNAAKNN VNPIANLLSS LVAKGLISAE 780 TESPTMVPSE PSEVLKGSKD KAANISTSSS IPVTSVSDSA AVPVSSARDE VDAATKSSLP 840 SAQSTSTKIR NLIGFDFKPN VIREYHEPVI RELLDDFPHH CKICGIRFKQ EEQYQRHLEW 900 HATREHGPIK VSRSWYPKSG DWIAGKVEEY SSEFEFADSA VVDNQETDSS QLDMMIRADE 960 NQCLCVLCGE LFEDVYCEER NEWMFKGAVN MNYSDINSEM ESRNAGPIIH AKCLSENSIV 1020 TNLDND*

Sequence ? help Back to Top

Protein Sequence Length: 1027 aa Download sequence Send to blast

MNMESTRRSL DRSREPGPKK PRLIEELSAR QLPQRQQGSG AVASGVSARV RVNDRDSESS  60
DLGRGGGYHP QSPPHDELVA QYRTALAELT FNSKPIITNL TIIAGENQSA AKAIAATVCA  120
NIIEVPSDQK LPSLYLLDSI VKNIGRDYIK YFAVRLPEVF CKAYRQVDPI VHSSMKHLFG  180
TWKGVFPPQC LQMIEKELGF TPAVNGSASV SATVRSDLQS QRPPHSIHVN PKYLERQRLQ  240
QSSTSKGVVD DMTGALLNSN EESERPERVL GASRPWLDPR INMLNNQHAH RDAFNDSVPE  300
KSIDGSFGGS QYGSGISSNL VSGAGRTGTK LIDLGHEKTW FKTDGSEAET IPGQKNGFSL  360
KRSFSNREAP KSINLEAHRQ PRQSITNIRN NVMSGNWKNS EEEEFTWDEM NTGLTDHGPN  420
VSSNLSTDSW MTDDENLEGE DHLHILRPYG AKVDREISTV KKQLPGFGGH PPSSWQLQKH  480
HTIDKLNLKP GYSDGFVSTI SGLPANANSL PVKKGNQSFT SKAVVGMAKI VGQQFDGEIE  540
SPSGQSPLQR QSPSLPGTAY HPHSMQNLPE QEMPQNIRTS QFSGGPTSQH IRDRSPTLHP  600
IVQVGNMRRT QEKDMQGPLS SATKLQQQQL DFSQTEVSAK TKLPQSKTSL TKEVSEQSTK  660
NNLSSAAVKS GIIPKKSITS NLDPRKHLSK SGVQLPRSGR SSPTTIISSG SAVASPSLLD  720
PLHKDSSSVP KKPQGKAGQP PQKLSTQPPA SSNLNAAKNN VNPIANLLSS LVAKGLISAE  780
TESPTMVPSE PSEVLKGSKD KAANISTSSS IPVTSVSDSA AVPVSSARDE VDAATKSSLP  840
SAQSTSTKIR NLIGFDFKPN VIREYHEPVI RELLDDFPHH CKICGIRFKQ EEQYQRHLEW  900
HATREHGPIK VSRSWYPKSG DWIAGKVEEY SSEFEFADSA VVDNQETDSS QLDMMIRADE  960
NQCLCVLCGE LFEDVYCEER NEWMFKGAVN MNYSDINSEM ESRNAGPIIH AKCLSENSIV  1020
TNLDND*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1sz9_A	3e-15	75	182	3	112	PCF11 protein
1sz9_B	3e-15	75	182	3	112	PCF11 protein
1sz9_C	3e-15	75	182	3	112	PCF11 protein
1sza_A	3e-15	75	182	3	112	PCF11 protein
1sza_B	3e-15	75	182	3	112	PCF11 protein
1sza_C	3e-15	75	182	3	112	PCF11 protein
2bf0_X	3e-15	75	182	8	117	PCF11
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.001G186700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	0.0	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007162855.1	0.0	hypothetical protein PHAVU_001G186700g
TrEMBL	V7CXK7	0.0	V7CXK7_PHAVU; Uncharacterized protein
STRING	XP_007162855.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4369	3	3

Link Out ? help Back to Top
Phytozome	Phvul.001G186700.1
Entrez Gene	18641840