PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Phvul.001G184900.1

Common Name

PHAVU_001G184900g

Organism

Phaseolus vulgaris

Taxonomic ID

3885

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus

Family

HD-ZIP

Protein Properties

Length: 220aa MW: 25457.9 Da PI: 7.4477

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Phvul.001G184900.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55	1.3e-17	55	109	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++q+e Le+ F+++ +++ e++ +L+++l L+ rq+ vWFqNrR+++k Phvul.001G184900.1 55 EKKKRLTSKQIELLERSFQEEIKLDPERKMKLSRELCLQPRQIAVWFQNRRTRWK 109 57788*************************************************9 PP
2	HD-ZIP_I/II	116.5	1.5e-37	55	145	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekk+rl+++q++lLE+sF+ee kL+perK++l+reL lqprq+avWFqnrR R+ktkqlE+ y++Lk++yd +++e+++L++ev +L++ l Phvul.001G184900.1 55 EKKKRLTSKQIELLERSFQEEIKLDPERKMKLSRELCLQPRQIAVWFQNRRTRWKTKQLEHLYDVLKHQYDVISNEKQKLQEEVMKLKAML 145 69*************************************************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	4.71E-18	45	113	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.2	51	111	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.8E-19	51	114	IPR009057	Homeodomain-like
SMART	SM00389	2.3E-14	53	115	IPR001356	Homeobox domain
CDD	cd00086	8.55E-15	54	112	No hit	No description
Pfam	PF00046	5.5E-15	55	109	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	86	109	IPR017970	Homeobox, conserved site
Pfam	PF02183	7.9E-10	111	145	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 220 aa Download sequence Send to blast
MDWHCTTKPF VPQPETLSFF YNYNNNPYPG VEVKQATLLE TGERSNPAMD NGSKEKKKRL 60 TSKQIELLER SFQEEIKLDP ERKMKLSREL CLQPRQIAVW FQNRRTRWKT KQLEHLYDVL 120 KHQYDVISNE KQKLQEEVMK LKAMLGKEQG FGMQRLGGYP EISGEETVES TSEGLRGSNN 180 KAWGKSNIEQ VADEGLCSLS VEDYNTVSLP LCHWPIVPY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	103	111	RRTRWKTKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Phvul.001G184900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	1e-131	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007162834.1	1e-164	hypothetical protein PHAVU_001G184900g
Swissprot	Q9LZR0	6e-44	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	V7CZK3	1e-162	V7CZK3_PHAVU; Uncharacterized protein
STRING	XP_007162834.1	1e-163	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3394	34	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	6e-42	homeobox 51

Link Out ? help Back to Top
Phytozome	Phvul.001G184900.1
Entrez Gene	18641822

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]