PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.001G170800.1 | ||||||||
Common Name | PHAVU_001G170800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | C2H2 | ||||||||
Protein Properties | Length: 218aa MW: 24489.4 Da PI: 10.3162 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.1 | 0.0013 | 106 | 128 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs+ L H +H Phvul.001G170800.1 106 FECKTCNRKFSSFQALGGHRASH 128 89**********99999998887 PP | |||||||
2 | zf-C2H2 | 14.1 | 0.00014 | 154 | 176 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ Fs L H+r+H Phvul.001G170800.1 154 HECSICGQEFSLGQALGGHMRKH 176 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.19 | 106 | 128 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 2.13E-8 | 106 | 176 | No hit | No description |
PROSITE profile | PS50157 | 10.699 | 106 | 133 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 9.0E-11 | 106 | 131 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 108 | 128 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.8E-4 | 152 | 178 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.067 | 154 | 176 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.533 | 154 | 181 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.3E-9 | 154 | 178 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 156 | 176 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MYPYINLRKG INLLKLKAQV SVGHKPHVDH IFWLLQRQHS GSNYVTRGVR VITTSQKRSP 60 TCMLGMKRQR GNEGFENLDL AKCLLLFSCP QESNKAQEKS FGSAEFECKT CNRKFSSFQA 120 LGGHRASHKK QKVEGEELKE QGKSLSLWSK PKMHECSICG QEFSLGQALG GHMRKHRGVS 180 NEGFVPIPSI DQVIAKIPVL KRSNSTRVMC LDLELHL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.001G170800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 0.0 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007162678.1 | 1e-161 | hypothetical protein PHAVU_001G170800g | ||||
TrEMBL | V7CWX9 | 1e-160 | V7CWX9_PHAVU; Uncharacterized protein | ||||
STRING | XP_007162678.1 | 1e-160 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF316 | 34 | 175 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 6e-36 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.001G170800.1 |
Entrez Gene | 18641678 |