PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G168700.2
Common NamePHAVU_001G168700g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 498aa    MW: 54617.4 Da    PI: 6.6311
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G168700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.61.5e-15297343455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+ Y+ksLq
  Phvul.001G168700.2 297 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAISYLKSLQ 343
                         6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-20291359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.076293342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.98E-17296347No hitNo description
Gene3DG3DSA:4.10.280.102.2E-20297351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-13297343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-18299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MDDHNPYPIL TPSGFPRQNK PSVADDDVME LLWHNGQVVM QSQNQRSLTK PTPPSRNSHD  60
ASAAGPSTAR EIRPQLDNFN QHLFMREGEM ASWLHYPIDD EPPLDQAFCT DFLYSPPTVN  120
NSSAMQTLTT SQLTDHRPMS APPRPPIPLP RPPEPKTPNF AYFVRHNTRA AEQSVKAAAR  180
ESTVVDSCDT PTATAAVSET VRNAAEPEEG GAGAPVPSTS AGGGRSTMMC DVTAPSSPGG  240
SSSIGEPVQV AAAEDRKRKG REAEEWESQS EDVDFDSEAK KQVRGSTSTK RSRAAEVHNL  300
SERRRRDRIN EKMKALQELI PRCNKSDKAS MLDEAISYLK SLQLQVQMMS MGCGMVPMMF  360
PGIQQYMPAM GMGVGMSMGM EMGMNRPVMP FPNMLPGSAL PAAAHLGPRF PMPPFHMPRV  420
PATNSSRMQA ENQSDNHMVA AGPPDPNQSR LPNFTDPYQQ YLGPHPMQFQ VIQNQAMNQP  480
NVGKPSNNRG HENQQNH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1301306ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G168700.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162650.10.0hypothetical protein PHAVU_001G168700g
RefseqXP_007162651.10.0hypothetical protein PHAVU_001G168700g
TrEMBLV7CX260.0V7CX26_PHAVU; Uncharacterized protein
STRINGXP_007162650.10.0(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.36e-66phytochrome interacting factor 3-like 5