PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G154800.1
Common NamePHAVU_001G154800g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 462aa    MW: 50478.9 Da    PI: 9.4271
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G154800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-057698123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C+k F r  nL+ H r H
  Phvul.001G154800.1 76 FVCEICHKGFQRDQNLQLHRRGH 98
                        89*******************88 PP
2zf-C2H212.30.00051152174123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k +  +s+ k H +t+
  Phvul.001G154800.1 152 WKCEKCSKIYAVQSDWKAHSKTC 174
                         58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.8E-57598IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.08E-57598No hitNo description
SMARTSM003550.0467698IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.6377698IPR007087Zinc finger, C2H2
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
SMARTSM00355170117147IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-4140173IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.08E-5147172No hitNo description
SMARTSM00355170152172IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MFPTAISNST SLSGDASVSS GTNVQDLGGL SQGLSNVSPQ QQPQKIKKKR SLPGNPDPDA  60
EVIALSPKTL LATNRFVCEI CHKGFQRDQN LQLHRRGHNL PWKLKQRNSK EVKKKAYVCP  120
EPSCVHHNPS RALGDLTGIK KHYCRKHGEK KWKCEKCSKI YAVQSDWKAH SKTCGTREYR  180
CDCGTLFSRK DSFITHRAFC DALAEESARL SANQLAVAAT TTTNPFQSLF LFQTQQQNFQ  240
NHHMTSFNQW DSSQENPNPS NIATSLHIKP ESQTFHNPTL SSLLQQQEQQ HPNKGMIISP  300
FRNLHVPSQA SIAATSAYMS ATALLQKAAT VGAAAMTGPS PAAAGPQRAM GHVTQLGAGE  360
FGTVSQLDPV VVPDYVRGFP GRSLKSDRLT RDFLGLTGEA NGGVDGAAVD VSTNVKDMLS  420
FAGNVEYLQP LRQHHHHTLL KPQQGFGFLE TTTAPETWGN C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-36148212367Zinc finger protein JACKDAW
5b3h_F3e-36148212367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G154800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162467.10.0hypothetical protein PHAVU_001G154800g
SwissprotO227591e-131IDD12_ARATH; Protein indeterminate-domain 12
TrEMBLV7CZW20.0V7CZW2_PHAVU; Uncharacterized protein
STRINGXP_007162467.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02670.11e-122indeterminate(ID)-domain 12
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]