PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G126400.1
Common NamePHAVU_001G126400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 252aa    MW: 28786.8 Da    PI: 8.7616
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G126400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.32.7e-1371123155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ++ +hn+ Er RR+++N+  + Lr+llP a   + kK+s  +++ ++ +YI +Lq
  Phvul.001G126400.1  71 KKLSHNASERDRRKKVNNLVSSLRSLLPLA--DQTKKMSIPSTVSRVLKYIPELQ 123
                         6789*************************6..48888***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.30370122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-1571141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-1071123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-1271138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.72E-1271127No hitNo description
SMARTSM003533.6E-1076128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MVALFSPPVF SAKGWLLEEE PLGYNITQNR FYQDDVSSEY SFPYQFYPSQ PQIEVELQRS  60
TAPSPDPAMV KKLSHNASER DRRKKVNNLV SSLRSLLPLA DQTKKMSIPS TVSRVLKYIP  120
ELQQQVQALT KRKEELLCRI SRQLQGDAVK KESHRKISHH NSSFVVSTTR LNDCEAVVHI  180
SSQETHKAPL SEILQCLEND GLFLLDASSS QTFGGRFFYN LHFQVAKADR LESDILTEKL  240
LPIYEKQRIF Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G126400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-161AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162129.10.0hypothetical protein PHAVU_001G126400g
TrEMBLV7CXL70.0V7CXL7_PHAVU; Uncharacterized protein
STRINGXP_007162129.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24023379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.18e-49bHLH family protein