PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.001G115200.1 | ||||||||
Common Name | PHAVU_001G115200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | LBD | ||||||||
Protein Properties | Length: 224aa MW: 24844.2 Da PI: 9.5459 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.9 | 6.1e-37 | 36 | 137 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk +r+kC++dC++apyf ++q +++f++vhk+FGa+n++kll +++ +r+++++s++yeA+ar+ +Pv+G+v++i++lqqq++ l Phvul.001G115200.1 36 PCAACKKMRKKCSSDCIFAPYFGSSQgSARFEAVHKVFGANNLSKLLLEVEVAHRNEVINSMCYEAQARLANPVHGCVSTISALQQQVAML 126 7*********************999989*************************************************************** PP DUF260 91 kaelallkeel 101 + el++++++l Phvul.001G115200.1 127 QGELVVVQNQL 137 *******9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.065 | 35 | 137 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.8E-36 | 36 | 134 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MTNPAQENVN EGTSSRANKQ KGKVSKRVRS RASSPPCAAC KKMRKKCSSD CIFAPYFGSS 60 QGSARFEAVH KVFGANNLSK LLLEVEVAHR NEVINSMCYE AQARLANPVH GCVSTISALQ 120 QQVAMLQGEL VVVQNQLINT KNLYESLLQR TYQYQQQPNI NVVMQPTQSN NLTPSTNSLM 180 NRSFFNPGFD NLAMQTTPST NNMEPRQFCG LPHFNNDITH LFP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-29 | 36 | 139 | 11 | 113 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-29 | 36 | 139 | 11 | 113 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.001G115200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-120 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007162000.1 | 1e-166 | hypothetical protein PHAVU_001G115200g | ||||
TrEMBL | V7CV31 | 1e-164 | V7CV31_PHAVU; Uncharacterized protein | ||||
STRING | XP_007162000.1 | 1e-165 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF28507 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 3e-47 | LOB domain-containing protein 20 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.001G115200.1 |
Entrez Gene | 18641103 |