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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Phvul.001G100500.1 |
Common Name | PHAVU_001G100500g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family |
NAC |
Protein Properties |
Length: 399aa MW: 45127.4 Da PI: 6.9595 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Phvul.001G100500.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 186.4 | 6.4e-58 | 16 | 143 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
lppGfrFhPtdee++++yL++kv+++++++ +i e+d++k+ePwdLpkk+k +ekewyfF+++d+ky+tg r+nrat+sgyWkatgkdke
Phvul.001G100500.1 16 LPPGFRFHPTDEEIITHYLTEKVKNSSFSA-IAIGEADLNKCEPWDLPKKAKIGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKE 105
79*************************999.88***************99999************************************** PP
NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
+++ kg+lvg+kktLvfy+grapkgekt+Wvmhe+rle
Phvul.001G100500.1 106 IYKGKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLE 143
***********************************985 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 399 aa
Download sequence Send
to blast |
MEEPIVLNKG EEPLDLPPGF RFHPTDEEII THYLTEKVKN SSFSAIAIGE ADLNKCEPWD 60 LPKKAKIGEK EWYFFCQKDR KYPTGMRTNR ATESGYWKAT GKDKEIYKGK GNLVGMKKTL 120 VFYRGRAPKG EKTNWVMHEF RLEGKFASYN LPKAAKDEWV VSRVFHKNTD VKKSSIPGLL 180 RINSIGDDLL DYSSLPPLMD PPYGNTNTTN PLSSTKSQSE GYYLPSFSIN NHHQLLIKPE 240 DHHRSYEIPT ISYTSNQANL NNNVNPIGNN TLSQPSNMFS DYYVHQNRIR SSIMPSIEGS 300 GFGNNNNITN HDQAILRAFA AKNNEHLGGI LEKQCKMEQF SSNHSQETGL SNDRNTETSS 360 VVSKQDNMGR NRALYEDLEG PSSVAPLSDL ECLQWDDY*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 1e-52 | 14 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-52 | 14 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-52 | 14 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-52 | 14 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-52 | 14 | 173 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-52 | 14 | 173 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KT031270 | 0.0 | KT031270.1 Glycine max clone HN_CCL_56 NAC transcription factor (Glyma16g04720.1_like1) mRNA, partial cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G18270.1 | 1e-105 | Arabidopsis NAC domain containing protein 87 |