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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.001G100200.1 | ||||||||
Common Name | PHAVU_001G100200g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | NAC | ||||||||
Protein Properties | Length: 346aa MW: 38783.9 Da PI: 9.0777 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.1 | 1.7e-53 | 8 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtd+el+ +yL kkv++ +l++ ++i+evdiyk++PwdLp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk+ Phvul.001G100200.1 8 LPPGFRFHPTDQELILHYLSKKVASIPLPV-SIIAEVDIYKLDPWDLPAKATFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKT 97 79****************************.89***************988899************************************* PP NAM 92 vlsk.....kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ +e+vg+kk Lvfy+gr pkg+kt+W+mheyrl Phvul.001G100200.1 98 IVTSlqggaAQENVGVKKALVFYEGRPPKGVKTNWIMHEYRL 139 ***9998887888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-64 | 4 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.781 | 8 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-27 | 9 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MGSPQSNLPP GFRFHPTDQE LILHYLSKKV ASIPLPVSII AEVDIYKLDP WDLPAKATFG 60 EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKTIVT SLQGGAAQEN VGVKKALVFY 120 EGRPPKGVKT NWIMHEYRLV DNNKPIKLKD SSMRLDDWVL CRIYKKSKHA LTSAEATIGV 180 GEVDQAEEHL FKETLLPILN FPTPPPQTTL MSQKSVSFSN LLDAMDYSVL SSFLSENHSN 240 PAGIGSSAGF NSENLEQQSS PINNPTNSYT FQKNTQLNPS LSNMESMRPK RQVSNIDDET 300 LYPSKKYLSS SCNFPTYENP QWNYLVKQSL LNQRLLLGPQ LQFQG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-74 | 5 | 170 | 14 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-74 | 5 | 170 | 14 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-74 | 5 | 170 | 14 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-74 | 5 | 170 | 14 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-74 | 5 | 170 | 17 | 172 | NAC domain-containing protein 19 |
3swm_B | 5e-74 | 5 | 170 | 17 | 172 | NAC domain-containing protein 19 |
3swm_C | 5e-74 | 5 | 170 | 17 | 172 | NAC domain-containing protein 19 |
3swm_D | 5e-74 | 5 | 170 | 17 | 172 | NAC domain-containing protein 19 |
3swp_A | 5e-74 | 5 | 170 | 17 | 172 | NAC domain-containing protein 19 |
3swp_B | 5e-74 | 5 | 170 | 17 | 172 | NAC domain-containing protein 19 |
3swp_C | 5e-74 | 5 | 170 | 17 | 172 | NAC domain-containing protein 19 |
3swp_D | 5e-74 | 5 | 170 | 17 | 172 | NAC domain-containing protein 19 |
4dul_A | 5e-74 | 5 | 170 | 14 | 169 | NAC domain-containing protein 19 |
4dul_B | 5e-74 | 5 | 170 | 14 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00333 | DAP | Transfer from AT3G04070 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.001G100200.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU440354 | 0.0 | EU440354.1 Glycine max transcriptional factor NAC11 (NAC11) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007161811.1 | 0.0 | hypothetical protein PHAVU_001G100200g | ||||
Swissprot | Q84TD6 | 1e-107 | NAC47_ARATH; NAC transcription factor 47 | ||||
TrEMBL | V7CX00 | 0.0 | V7CX00_PHAVU; Uncharacterized protein | ||||
STRING | XP_007161811.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6621 | 27 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.1 | 1e-104 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.001G100200.1 |
Entrez Gene | 18640948 |
Publications ? help Back to Top | |||
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