PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G091400.1
Common NamePHAVU_001G091400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family SBP
Protein Properties Length: 365aa    MW: 40662.5 Da    PI: 7.4991
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G091400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.27.7e-4173150178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +C v+gC++dls+++eyhrrh+vCe+hsk+pvvlv g++qrfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+q+
  Phvul.001G091400.1  73 CCSVDGCSSDLSDCREYHRRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQP 150
                         6**************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.8E-3367135IPR004333Transcription factor, SBP-box
PROSITE profilePS511413271148IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.01E-3872153IPR004333Transcription factor, SBP-box
PfamPF031101.0E-3074147IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MDWDGKEFAW DPRGLELANG EGQRNEAASV DLRLGEEKSV PEVAKDPRDS KTVSSPSGSS  60
KRSRLQNGSQ NMCCSVDGCS SDLSDCREYH RRHRVCEKHS KTPVVLVGGK QQRFCQQCSR  120
FHSLGEFDEV KRSCRKRLDG HNRRRRKPQP PSLFMATEKF MYNYKGPRIL HFGSPETYVN  180
PIMRSMWSAT AKTGAESGYD PPRLLYRIDK HKQDKGHPLW QENDPIVGNG NEAMLETPIC  240
QPIHGTITPS TGGKSSRKHS SDAKPGSFDS GCALYLLSTL QSQSPESSMV QSSITCPMQS  300
PSGSVHFDTV NEYAYSETEK DKPSGQVLVL DANTTNLHYN GMLQMGLDGL VENDDPLTLP  360
FLWE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-27741471184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130147KRSCRKRLDGHNRRRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G091400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937510.0BT093751.1 Soybean clone JCVI-FLGm-17B4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161706.10.0hypothetical protein PHAVU_001G091400g
TrEMBLV7CWR50.0V7CWR5_PHAVU; Uncharacterized protein
STRINGXP_007161706.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100312640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.19e-42SBP family protein