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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.001G091100.1 | ||||||||
Common Name | PHAVU_001G091100g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | NAC | ||||||||
Protein Properties | Length: 208aa MW: 23563.9 Da PI: 7.045 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 95.2 | 1.1e-29 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekew..yfFskrdkkyatgkrknratksgyWkatgkd 89 lp+G+rF+Ptde l +yL+k++ +++l+ + i+++d++++ePw Lp ++ +w +fF + ++ ++ ++r + +g W+ kd Phvul.001G091100.1 14 LPVGYRFDPTDEILAGYYLRKRIMAQPLPN-DLIQDCDVHQTEPWALPGG--GKYMNWhrFFFYDVR-THVFENPEKRDAGKGQWEVVEKD 100 799*************************99.99***************43..233466325555444.4455678899999********** PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ev ++ ++ k +Lv++k++ ++ kt+Wvmhe+rl Phvul.001G091100.1 101 QEVEFPDELVIAKKSVLVYWKAKGNSLAKTNWVMHEFRL 139 *****999999**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.23E-33 | 11 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.522 | 14 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-16 | 15 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MEVLNPVEGK TYRLPVGYRF DPTDEILAGY YLRKRIMAQP LPNDLIQDCD VHQTEPWALP 60 GGGKYMNWHR FFFYDVRTHV FENPEKRDAG KGQWEVVEKD QEVEFPDELV IAKKSVLVYW 120 KAKGNSLAKT NWVMHEFRLA LKSHPSKMTG MAVCRIFETK RGKKAKGSEG VTSNRSNVEE 180 AMDVTPTVID FTVECGTETG PPPPGTP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-17 | 14 | 160 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-17 | 14 | 160 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-17 | 14 | 160 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-17 | 14 | 160 | 17 | 166 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-17 | 14 | 160 | 17 | 166 | NAC domain-containing protein 19 |
4dul_B | 1e-17 | 14 | 160 | 17 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.001G091100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 6e-68 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007161703.1 | 1e-155 | hypothetical protein PHAVU_001G091100g | ||||
TrEMBL | V7CU58 | 1e-154 | V7CU58_PHAVU; Uncharacterized protein | ||||
STRING | XP_007161703.1 | 1e-155 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13413 | 11 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.2 | 4e-27 | NAC domain containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.001G091100.1 |
Entrez Gene | 18640850 |