PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G089900.1
Common NamePHAVU_001G089900g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family GRAS
Protein Properties Length: 664aa    MW: 73782.1 Da    PI: 6.2333
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G089900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS433.51.6e-1323046621374
                GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 
                         lv+lLl+cAeav +++  la+++L +l+  ++p gd+mqR+aa+ft  L+arl+     +    p+++ s++ns e+l+++++ ++++P++
  Phvul.001G089900.1 304 LVHLLLACAEAVGKEEYMLARRYLHHLNRVVTPLGDSMQRVAACFTDSLSARLNA----TLTPKPSKPLSPSNSMEVLKIYQIVYQACPYV 390
                         68****************************************************9....66677888888899****************** PP

                GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlv 182
                         kf+h+taNqaI ea+e+eervH+iD+di qG QWpa++qaLa+Rp  +p lRiTgvg+    s ++++etg+ L+++A++l++pfef++ v
  Phvul.001G089900.1 391 KFAHFTANQAIFEAFETEERVHVIDLDILQGYQWPAFMQALAARPTAAPFLRITGVGP----SLDAVRETGRCLTELAHSLRIPFEFHA-V 476
                         **********************************************************....9**************************.7 PP

                GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                          ++ledl++++L+ + gEalaVn v +lhr++       ++  ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a
  Phvul.001G089900.1 477 GEQLEDLRPHMLHRRVGEALAVNAVNRLHRVP------GNHLGNLLAMIRDQAPNIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDSLDA 561
                         *******************************9......444557*********************************************** PP

                GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkd 364
                         ++p++s +r+kvE+ ++++ei+n+vacegaer+erhe+lekWr+ +e  GFk v+ls +a++q k ll  ++ dgyr+ +++g+l+lgW+d
  Phvul.001G089900.1 562 TFPADSAQRAKVEQYIFAPEIRNIVACEGAERFERHERLEKWRKIMEGKGFKGVALSPNAVTQSKILLGLYSCDGYRLTDDKGCLLLGWQD 652
                         ******************************************************************************************* PP

                GRAS 365 rpLvsvSaWr 374
                         r++v++SaWr
  Phvul.001G089900.1 653 RAIVAASAWR 662
                         *********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.723278642IPR005202Transcription factor GRAS
PfamPF035145.4E-130304662IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MINSLCGTLK SESNSKTKLQ ATSSNDSFLQ SKKNATQSSG DIDQTTLTPP SLNLPGLKFE  60
LDGDVEVQSP DSSMWESFFA DQLDGDFMIS SPVRNVPSPQ VSSYNCNYNY AHGMQSQSLS  120
GCSPPRFSSS QIGAFNSTHK GKGLSPLHRV FNSPNNQYMQ HVENLSLPAI EEFLEDYQGY  180
SSTKVSSEIA TSSECFDLST QIPSSLLDTL TLPNSSRYHG SVDEESSVHA AGSSQLSQES  240
DIYHQMGSMA SASLSQALQQ ERYQEKRQKR QAQQLQQQQQ RQQDNMMVPI PIGMEQEQDS  300
GLQLVHLLLA CAEAVGKEEY MLARRYLHHL NRVVTPLGDS MQRVAACFTD SLSARLNATL  360
TPKPSKPLSP SNSMEVLKIY QIVYQACPYV KFAHFTANQA IFEAFETEER VHVIDLDILQ  420
GYQWPAFMQA LAARPTAAPF LRITGVGPSL DAVRETGRCL TELAHSLRIP FEFHAVGEQL  480
EDLRPHMLHR RVGEALAVNA VNRLHRVPGN HLGNLLAMIR DQAPNIVTLV EQEASHNGPY  540
FLGRFLEALH YYSAIFDSLD ATFPADSAQR AKVEQYIFAP EIRNIVACEG AERFERHERL  600
EKWRKIMEGK GFKGVALSPN AVTQSKILLG LYSCDGYRLT DDKGCLLLGW QDRAIVAASA  660
WRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-972926617378Protein SCARECROW
5b3h_A4e-972926616377Protein SCARECROW
5b3h_D4e-972926616377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G089900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161687.10.0hypothetical protein PHAVU_001G089900g
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLV7CXS50.0V7CXS5_PHAVU; Uncharacterized protein
STRINGXP_007161687.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.17e-98RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]