PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G084000.1
Common NamePHAVU_001G084000g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family ERF
Protein Properties Length: 327aa    MW: 36576.4 Da    PI: 7.0388
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G084000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.5e-20135184255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa+a++aa++k++g
  Phvul.001G084000.1 135 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAAAAYDAAALKFKG 184
                         7********.**********94....45************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.4E-33134193IPR001471AP2/ERF domain
SMARTSM003801.5E-37135198IPR001471AP2/ERF domain
PfamPF008471.6E-13135184IPR001471AP2/ERF domain
CDDcd000181.26E-22135194No hitNo description
PROSITE profilePS5103225.264135192IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-22135193IPR016177DNA-binding domain
PRINTSPR003672.1E-11136147IPR001471AP2/ERF domain
PRINTSPR003672.1E-11158174IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MINAKLHVMF NLNYECFFDM AYLAARSSAR ERSICCVHRY KTIEEPFIEL NKVDPRHGKR  60
PLPSDHASRE NREGFNFPTQ QGEEPSSYPF LHPIHTAHDS TPSTPIPQYG QITTSTLIET  120
PDPSQHPLNQ GRKRHYRGVR QRPWGKWAAE IRDPKKAARV WLGTFDTAEA AAAAYDAAAL  180
KFKGSKAKLN FPEHVLLASI PPPPSRSTQN INSNNSYYAS SSPLAPTPSP PAYQPQPQEE  240
AFPNLMQYAQ LLWSRDDDDL QRVASGLHHH NPNESFYDSS SSTLFSSSST SVTQSDQQIG  300
DDASGSKEED FYGSCFFRGS DFHGKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-24134195163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A6e-24131195166ATERF1
3gcc_A6e-24131195166ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G084000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-180AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161612.10.0hypothetical protein PHAVU_001G084000g
TrEMBLV7CXI50.0V7CXI5_PHAVU; Uncharacterized protein
STRINGXP_007161612.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.17e-30ERF family protein