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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.001G059900.2 | ||||||||
Common Name | PHAVU_001G059900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | NAC | ||||||||
Protein Properties | Length: 341aa MW: 38092 Da PI: 9.5857 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 177.8 | 2.9e-55 | 14 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 lppGfrFhPtdeel+++yL++k+++++++ ++i+ vd++k+ePwdLp k+k ++kewyfF rd+ky+tg r+nrat++gyWk+tgkdke Phvul.001G059900.2 14 LPPGFRFHPTDEELISYYLTNKISDSNFTG-KAIAVVDLNKCEPWDLPGKAKMGQKEWYFFNLRDRKYPTGVRTNRATNTGYWKTTGKDKE 103 79*************************999.88***************999999************************************* PP NAM 92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +l++ ++elvg+kktLvfykgrap+gekt+Wvmheyr+ Phvul.001G059900.2 104 ILNSvTSELVGMKKTLVFYKGRAPRGEKTNWVMHEYRI 141 **9989999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-62 | 11 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.305 | 14 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-28 | 15 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MEGTRDEKKK EETLPPGFRF HPTDEELISY YLTNKISDSN FTGKAIAVVD LNKCEPWDLP 60 GKAKMGQKEW YFFNLRDRKY PTGVRTNRAT NTGYWKTTGK DKEILNSVTS ELVGMKKTLV 120 FYKGRAPRGE KTNWVMHEYR IHSKSTFKID KQDEWVVCRV FRKSGGARKF PSNSNHTNTR 180 TLNPYSVEVG PSIVPPPMMH LGDPSAHFNF PYGSRNPSEL LRGGGSTSAN VMNLPTMHPH 240 FNNPAAAGAE TAGFTISGLN LNLGGATTQT QPFLRPMMPP PHPLSVAQLN HDFSSNMVTH 300 TALAAHNVGY GADMANANSH GNRYMAMDHC MDLDNYWPSY * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-54 | 13 | 169 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-54 | 13 | 169 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-54 | 13 | 169 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-54 | 13 | 169 | 16 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-54 | 13 | 169 | 16 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-54 | 13 | 169 | 16 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00277 | DAP | Transfer from AT2G24430 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.001G059900.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 1e-124 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007161322.1 | 0.0 | hypothetical protein PHAVU_001G059900g | ||||
TrEMBL | V7CWM0 | 0.0 | V7CWM0_PHAVU; Uncharacterized protein | ||||
STRING | XP_007161322.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G24430.2 | 1e-110 | NAC domain containing protein 38 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.001G059900.2 |
Entrez Gene | 18640522 |