PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.001G037000.2 | ||||||||
Common Name | PHAVU_001G037000g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | HSF | ||||||||
Protein Properties | Length: 374aa MW: 42462.6 Da PI: 4.6615 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 117.1 | 1e-36 | 45 | 136 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 Fl+k+y+++ed+++++++sws++ nsfvv+d+++f++++Lp+yFkh+nf+SF+RQLn+YgF+kv+ ++ weF+++ F +g+++ Phvul.001G037000.2 45 FLTKIYDMVEDPSTDSVVSWSTSCNSFVVWDSHKFSTNILPRYFKHNNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLAGQRH 126 9****************************************************************999.........************** PP XXXXXXXXXX CS HSF_DNA-bind 93 llekikrkks 102 ll++ikrk++ Phvul.001G037000.2 127 LLKSIKRKRK 136 *******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 1.2E-38 | 41 | 134 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 8.8E-60 | 41 | 134 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.77E-34 | 42 | 134 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Pfam | PF00447 | 2.8E-32 | 45 | 134 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.7E-20 | 45 | 68 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.7E-20 | 83 | 95 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 84 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 9.7E-20 | 96 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 374 aa Download sequence Send to blast |
MEGIRVKEEE TVTCGGGGGS SSSSSSFSFS PQPMEGLNEV GTPPFLTKIY DMVEDPSTDS 60 VVSWSTSCNS FVVWDSHKFS TNILPRYFKH NNFSSFIRQL NTYGFRKVDP DRWEFANEGF 120 LAGQRHLLKS IKRKRKVSLS MQERGGGACV EVGEFGLEGE LERLKRDRNI LMAEIVRLRH 180 QQLNSRNQLS AMETRLQATE KKQQKMMIFL AKALKNPSFM QQLVHNKTPQ SREMLDAEIN 240 RKRRLIASQS LENLQQDDPV TLVDYPSLDQ DLATMKPEMD TFFSPAFDSE HGNEIKEPAL 300 DSDIAASQSY FGDTILEDFF IKDLVNEDPK DEVIIGDCSQ IDVPLEDLVA NSDDWMEQFQ 360 DHVDHMDYSD SKP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 1e-27 | 42 | 134 | 26 | 129 | Heat shock factor protein 1 |
5d5v_B | 1e-27 | 42 | 134 | 26 | 129 | Heat shock factor protein 1 |
5d5v_D | 1e-27 | 42 | 134 | 26 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.001G037000.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007161029.1 | 0.0 | hypothetical protein PHAVU_001G037000g | ||||
Refseq | XP_007161030.1 | 0.0 | hypothetical protein PHAVU_001G037000g | ||||
Swissprot | P41152 | 1e-112 | HSF30_SOLPE; Heat shock factor protein HSF30 | ||||
TrEMBL | V7CSB2 | 0.0 | V7CSB2_PHAVU; Uncharacterized protein | ||||
STRING | XP_007161029.1 | 0.0 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 1e-105 | heat shock transcription factor A2 |
Link Out ? help Back to Top | |
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Phytozome | Phvul.001G037000.2 |
Entrez Gene | 18640283 |
Publications ? help Back to Top | |||
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