PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G031300.1
Common NamePHAVU_001G031300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 430aa    MW: 46141.1 Da    PI: 6.3956
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G031300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.3e-10272320355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  Phvul.001G031300.1 272 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 320
                         58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.50E-11267324No hitNo description
SuperFamilySSF474595.89E-17267337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485269319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16270337IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-7272320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10275325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MGGQENAMGF QHGNENILTC PSSALSGANV NVSEMAISSV SMAKPSDVAN PFLASSAWDP  60
LVSLSQAQTF GGSSMVSHAD FANANSSYPL VLENQGISNT SHLVQYMSDS NLVGMVPKVH  120
SYASRGFSEM VGAASFGQHG SGDVANTGYP PHYNPIKEAQ INGEQSQVED SIPEEEAPGS  180
APSGNRRKRG LDHNSTFSPN KNAESETVKD SPGRACDGPK EHEKKPKVEQ NNSADLRGKQ  240
SAKQAKDNSS QSGEAPKENF IHVRARRGQA TNSHSLAERV RREKISERMR LLQELVPGCN  300
KITGKAVMLD EIINYVQSLQ QQVEFLSMKL ATVNPELNFD VDRILSKDIL QSRIGHGIGA  360
YGPGINSSHT FPSGNFHGTL AGMPSTSSQF PPLPQNVLDH EFQSFYGIGY DSNTALDNLG  420
PNGRLKTEL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G031300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160954.10.0hypothetical protein PHAVU_001G031300g
TrEMBLV7CU850.0V7CU85_PHAVU; Uncharacterized protein
STRINGXP_007160954.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75853345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.13e-84bHLH family protein