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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Phvul.001G023900.1 | ||||||||
Common Name | PHAVU_001G023900g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
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Family | C2H2 | ||||||||
Protein Properties | Length: 376aa MW: 43790.4 Da PI: 7.1272 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 15.5 | 4.8e-05 | 142 | 165 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+C+ Cg+ ++++++Lk+H + H Phvul.001G023900.1 142 YTCGVCGRKCKTHMDLKKHFKQlH 165 9******************98766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.99 | 142 | 170 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 144 | 165 | IPR007087 | Zinc finger, C2H2 |
CDD | cd06167 | 3.50E-12 | 156 | 297 | No hit | No description |
Gene3D | G3DSA:3.40.50.1010 | 1.7E-5 | 228 | 296 | IPR029060 | PIN domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MNNSIILHNA NAIHFNFHSA LSQTQPRHLP WNKHITQRYP RIQCCCVEID MVKNSQGIYA 60 PKSDKVVVLW DLDNKPPRGP PYDAAVSLKT LAARFGEVTD FSAYANRHAF VHLPQWVLHE 120 RRERRSLDIL ERKGVVTPSE PYTCGVCGRK CKTHMDLKKH FKQLHQRERE KKLNRLKSLK 180 GKKKRDRFKE RFLRGNHKYN EAARTLLVPK VGYGLAAELR RAGVFVKTVE DKPQAADWAL 240 KRQMVHSMSR GIDWLFLVSD DSDFSEMLRR AREADLGTVV VGDWDRALGR HADLWVPWSA 300 VENGEVDLVP KRKKRTEHGF QNGHDRDDWG VLNEDEELGQ EFMLHSEDED ENVENYYYDD 360 DEEEEEEEED GLYIF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Phvul.001G023900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015036 | 0.0 | AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007160873.1 | 0.0 | hypothetical protein PHAVU_001G023900g | ||||
TrEMBL | V7CRQ3 | 0.0 | V7CRQ3_PHAVU; Uncharacterized protein | ||||
STRING | XP_007160873.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6441 | 31 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52010.1 | 1e-154 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Phvul.001G023900.1 |
Entrez Gene | 18640151 |