PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G023400.1
Common NamePHAVU_001G023400g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family NAC
Protein Properties Length: 281aa    MW: 31356.2 Da    PI: 6.5081
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G023400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM85.69.8e-2791431128
                 NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLp.k.....kvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                         lppG+rF P++e l+ +yL+kk e++   ++ ++ ike+++y+++P +Lp +      +++++k+w+ ++ +++k     r +r++ksg+W
  Phvul.001G023400.1   9 LPPGYRFYPSEEVLIRYYLTKKNENRAggFNGSDLIKELNLYDHDPFELPdAacfpyGYRGRKKHWFCYTVKETK-----RGTRKVKSGFW 94 
                         79********************9999988888899**************95377765445566677777776654.....66788899*** PP

                 NAM  84 katgkdkevlsk...kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                           +g+ +e+ ++   ++++ g++  +vfy g + +++++tdW++ ey+l
  Phvul.001G023400.1  95 LRKGRVREIRDNggiGNAVLGTRSRFVFYVGnSLKNATRTDWILYEYAL 143
                         ***********98888888**********874668899*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-318159IPR003441NAC domain
PROSITE profilePS5100535.2429159IPR003441NAC domain
PfamPF023655.6E-1610143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MEDQPNDALP PGYRFYPSEE VLIRYYLTKK NENRAGGFNG SDLIKELNLY DHDPFELPDA  60
ACFPYGYRGR KKHWFCYTVK ETKRGTRKVK SGFWLRKGRV REIRDNGGIG NAVLGTRSRF  120
VFYVGNSLKN ATRTDWILYE YALVDQILAS LVLCRVVNKL HHKNSPSEIG RSCCAEESAA  180
VAVRHVGVQH DGCVGGDVDE VQVRDDGFVN RETEAAENPI RCGGEHDHAA PVSVAQGSQP  240
VQERLSGLPS GSGLFIEAVT SHQHMLSILE EDFIELNDIV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-20815916165NO APICAL MERISTEM PROTEIN
1ut4_B6e-20815916165NO APICAL MERISTEM PROTEIN
1ut7_A6e-20815916165NO APICAL MERISTEM PROTEIN
1ut7_B6e-20815916165NO APICAL MERISTEM PROTEIN
3swm_A8e-20815919168NAC domain-containing protein 19
3swm_B8e-20815919168NAC domain-containing protein 19
3swm_C8e-20815919168NAC domain-containing protein 19
3swm_D8e-20815919168NAC domain-containing protein 19
3swp_A8e-20815919168NAC domain-containing protein 19
3swp_B8e-20815919168NAC domain-containing protein 19
3swp_C8e-20815919168NAC domain-containing protein 19
3swp_D8e-20815919168NAC domain-containing protein 19
4dul_A6e-20815916165NAC domain-containing protein 19
4dul_B6e-20815916165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G023400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160867.10.0hypothetical protein PHAVU_001G023400g
TrEMBLV7CVC70.0V7CVC7_PHAVU; Uncharacterized protein
STRINGXP_007160867.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130012628
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32510.12e-23NAC domain containing protein 11