PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G023200.1
Common NamePHAVU_001G023200g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family bHLH
Protein Properties Length: 289aa    MW: 32062.1 Da    PI: 9.0866
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G023200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.83e-16119165455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  E+rRR+riN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  Phvul.001G023200.1 119 FHNLSEKRRRSRINEKMKALQKLIPNS-----NKTDKASMLDEAIEYLKQLQ 165
                         5*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.96E-20112175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-20112175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.885115164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.69E-18118169No hitNo description
PfamPF000101.1E-13119165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-18121170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MAGDMHQPQP SLARTFPPNS EDFSTFFNQL LHNPPPLGMD PNHSASDFTP HTNTNNPLPS  60
SPSTFHFSHP IPVTHATTFK QHNNNHNPDF TSSAEKSVEA RKPVPPPRSS SKRSRAAEFH  120
NLSEKRRRSR INEKMKALQK LIPNSNKTDK ASMLDEAIEY LKQLQLQVQM LMMRNGFSLH  180
PMSLPGEQRP MIMPQTGLNL DESDGLQNST SAIASSSKEE NLIRHAFSFP KQCSISDQSV  240
VVPSVTRLAT SNAPSTFHPS IKDTLYDSMP QLFMDAPKIG KDPSPDLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G023200.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-115AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160864.10.0hypothetical protein PHAVU_001G023200g
TrEMBLV7CTZ60.0V7CTZ6_PHAVU; Uncharacterized protein
STRINGXP_007160864.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22763379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.14e-28bHLH family protein