PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G014300.1
Common NamePHAVU_001G014300g
Organism
Phaseolus vulgaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family MYB_related
Protein Properties Length: 99aa    MW: 11303.8 Da    PI: 9.3838
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G014300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.92.7e-09651346
                        SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                         WTt   +++ +a + + ++   +W   ar +g g+t +++k ++ +
  Phvul.001G014300.1  6 VWTTKQNKKFENALAIYDKDtpdRWQNLARAVG-GKTVEEVKRHYEM 51
                        7********************************.***********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.416262IPR017884SANT domain
SMARTSM007172.7E-7355IPR001005SANT/Myb domain
SuperFamilySSF466892.85E-12560IPR009057Homeodomain-like
PfamPF002494.5E-6652IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-5759IPR009057Homeodomain-like
CDDcd001673.38E-6753No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MASSSVWTTK QNKKFENALA IYDKDTPDRW QNLARAVGGK TVEEVKRHYE MLVDDLKQIE  60
EGHVPLPNYR KVAATEGGSI RGYSYMNEEQ RMKVLSLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-32298693RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPhvul.001G014300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150361e-132AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007160753.11e-68hypothetical protein PHAVU_001G014300g
SwissprotF4JVB85e-35RADL1_ARATH; Protein RADIALIS-like 1
TrEMBLV7CRD32e-67V7CRD3_PHAVU; Uncharacterized protein
STRINGXP_007160753.14e-68(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-37RAD-like 1
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]