PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl017925

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NAC

Protein Properties

Length: 284aa MW: 32417.5 Da PI: 8.6565

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55342620	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	139.3	2.3e-43	20	146	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 pGfrF Pt+eelv +yLkk+v+g + l+++ +i+++d+y+++Pw+Lp +++ +ek+w+fF++r++k+ r++r t sgyWkatg+d+ + +k e Pgl017925 20 IPGFRFYPTEEELVGFYLKKRVQGGHqLNFDIIIPTLDLYRYDPWELPgLAIDVGEKQWFFFVPRESKKC--ARPTRLTVSGYWKATGSDRGIRNKLLEC 117 59*******************9985666556***********778999*******99875..7******************99999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g+kktLvfykg+ap g++tdW+m+eyr+ Pgl017925 118 IGVKKTLVFYKGKAPLGQRTDWIMNEYRM 146 *************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.59E-46	12	168	IPR003441	NAC domain
PROSITE profile	PS51005	50.546	19	168	IPR003441	NAC domain
Pfam	PF02365	2.7E-24	21	146	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MAIVEEMYND GALQGELTAI PGFRFYPTEE ELVGFYLKKR VQGGHQLNFD IIIPTLDLYR 60 YDPWELPGLA IDVGEKQWFF FVPRESKKCA RPTRLTVSGY WKATGSDRGI RNKLLECIGV 120 KKTLVFYKGK APLGQRTDWI MNEYRMPELS SSPPKKKMDM VLCRIYKKAA SQKSMEQRTQ 180 SVRVEKGKLV VSARDEYEEK CHSISLYGSS CQSSLMTEAK VPTSCHNEKQ KGVCSSNFSK 240 MNNEAIQFKC LEPIMSSEER LVLNVGGIVP TQNYIELCEC TVNR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-43	16	173	14	170	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-43	16	173	14	170	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-43	16	173	14	170	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-43	16	173	14	170	NO APICAL MERISTEM PROTEIN
4dul_A	6e-43	16	173	14	170	NAC domain-containing protein 19
4dul_B	6e-43	16	173	14	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269\|PubMed:26834774}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269\|PubMed:26834774}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020681077.1	6e-61	NAC domain-containing protein 22
Swissprot	Q10S65	1e-55	NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBL	A0A075M5N5	1e-111	A0A075M5N5_9SPER; NAC domain protein
STRING	Pavir.J01198.1.p	9e-60	(Panicum virgatum)
STRING	XP_008791987.1	3e-60	(Phoenix dactylifera)
STRING	XP_008813634.1	4e-60	(Phoenix dactylifera)
STRING	MLOC_65456.1	3e-59	(Hordeum vulgare)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.1	1e-56	NAC domain containing protein 35

Publications ? help Back to Top
Hong Y,Zhang H,Huang L,Li D,Song F Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice. Front Plant Sci, 2016. 7: p. 4 [PMID:26834774]