PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Expression |

Function |

Publication

Basic Information? help Back to Top

TF ID

Pgl017872

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

bHLH

Protein Properties

Length: 302aa MW: 33622 Da PI: 6.177

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55330432	PU_ref	Unigene	View CDS
PUT-175a-Picea_glauca-12235	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	34.8	3e-11	136	183	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN+++ L++l+P++ +k Ka +L + ++Y++sLq Pgl017872 136 SHSLAERVRREKINQRMKFLQDLVPTC----NKVTGKAVMLDEIINYVQSLQ 183 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.54E-11	130	187	No hit	No description
SuperFamily	SSF47459	5.63E-18	130	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-18	132	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.967	132	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.6E-8	136	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.9E-11	138	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
GLVSGGEFSP FNNIDRNSSE NVVCGASNLP PIVGGVQQGG GENMSVFSEP TKCVDDGNGK 60 KRRAKSLTSA ENSKEPEEAK AKRCRLGESS EIDDDDNNDE TSDSNSKKGK EKNSNVSQKD 120 DNYIHVRARR GQATDSHSLA ERVRREKINQ RMKFLQDLVP TCNKVTGKAV MLDEIINYVQ 180 SLQHQVEFLS MKLATVNPKL DFNVDNFFAK EMSGSFSSKG MSPTFFHLDQ LKQASLQTVP 240 SPGSDIPSTM SSVDSAEMFD GTNFQRQEGW DSELQNMYNM GLLQSRLQQH QHQQRPLXYS 300 IH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	59	64	KKRRAK

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006878569.1	6e-63	transcription factor bHLH63 isoform X2
Refseq	XP_020522826.1	1e-63	transcription factor bHLH63 isoform X3
Swissprot	Q9CAA9	6e-56	BH049_ARATH; Transcription factor bHLH49
TrEMBL	A9NUN3	0.0	A9NUN3_PICSI; Uncharacterized protein
STRING	ERM94714	2e-62	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.2	2e-54	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]