PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl017702
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 407aa    MW: 44861.6 Da    PI: 7.9844
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55340711PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.34.3e-11259306455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++i ++++ L+ l+P +    sk  sK  +Le+ ++Y++sLq
  Pgl017702 259 SHSLAERVRRQKISDRMNVLQNLIPGC----SKLTSKTLVLEEIINYVQSLQ 306
                8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.02E-9253310No hitNo description
SuperFamilySSF474594.45E-16253321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.212255305IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.5E-16255319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-8259306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-10261311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MTAFSNYYRI FQESVGITSP ISDSQDTKSQ YNVTNHLADQ QYIKFAPVDG LTSSDSCEAI  60
TTQAISLRPV SSAAEKALLY LYESPTDSLR QQEIIDHGMI NDEQVAATAI YGRSVGVDHG  120
DRAVYPTPKS TEREERKDCD ATNLLFNTPG DGSGMKVPLA KINTACWRMK KRKTDPSVRR  180
SVLEKNVPVL LKKPKRGICK SSPNSSASSA NGDNSKRKLD VISRDPLELL FNIVKDEQKA  240
ESEKDYIHVR ARRGQATDSH SLAERVRRQK ISDRMNVLQN LIPGCSKLTS KTLVLEEIIN  300
YVQSLQSQVE ILSMKLASMT PLCAFDQQNT SHLSRAALPD PMVAYGSSPC YVDRANTVAQ  360
QQTPGTFTEE CSTKLFPTTN GGTVGVRAWS PSLDQTLVGL SQIDASE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.255410.0stem
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.24e-38bHLH family protein