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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pgl016342 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | NAC | ||||||||||||
Protein Properties | Length: 435aa MW: 49075.7 Da PI: 4.6142 | ||||||||||||
Description | NAC family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 145.4 | 3e-45 | 6 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGfrFhPtdeel+ +yLk k+++ ++ evi++vd+y++ePwdLp k + +++ + s+rd+ky++g+r+nrat++gyWkatg+d++v+s Pgl016342 6 LPPGFRFHPTDEELIFNYLKVKLKNGLkASEVEVIPDVDLYRCEPWDLPeKsFLPNTDMDDISXSPRDRKYPNGSRTNRATEAGYWKATGRDRKVYS-LA 104 79********************998764555689***************43333345557799**********************************.88 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129 +++g+kkt vfy+grap+ge+tdWvmheyrle Pgl016342 105 STIGIKKTPVFYRGRAPQGERTDWVMHEYRLE 136 89****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.02E-48 | 3 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.807 | 6 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.3E-21 | 7 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MGTFALPPGF RFHPTDEELI FNYLKVKLKN GLKASEVEVI PDVDLYRCEP WDLPEKSFLP 60 NTDMDDISXS PRDRKYPNGS RTNRATEAGY WKATGRDRKV YSLASTIGIK KTPVFYRGRA 120 PQGERTDWVM HEYRLEENEC EAGPCLQVPA SWRRVGSSMR KNAFVLCRAL KKSELGIKSG 180 EQYTAPVEKG DLFLTKKNPS PDYFGDIEVH SEDQSKLVEG IDAISNLPSK ILLKILNDTT 240 GDSATVNTWL DLLLDDTDSN SSCVAPDEDT INTQVNAMPD TPTTQPEFAC LPFIESDFPQ 300 IPVDLRFSQY RDPNEGLDAF FEEEKMLEEM FSAASQDYNN SKAYHSSLGD TFSDILNGGY 360 IELKNLIPSI EELDHHDSCL WEVPNSLLDH KGTGIQVSSD SPIFQGHQQG FLFEGIAARR 420 VRMQLHKMED SAEKK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-41 | 6 | 173 | 15 | 169 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.31364 | 0.0 | stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LLW8 | 0.0 | B8LLW8_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 1e-68 | NAC domain containing protein 28 |