PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

HD-ZIP

Protein Properties

Length: 845aa MW: 92609.7 Da PI: 6.3705

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S58330568	PU_ref	Unigene	View CDS
PUT-175a-Picea_glauca-3049271	PU_unref	plantGDB	View CDS
PUT-175a-Picea_glauca-3149262	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.4	2.5e-18	18	76	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Pgl015944 18 KYVRYTAEQVEALERLYHECPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76 5679*****************************************************97 PP
2	START	164.5	7.6e-52	166	374	2	205
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 +aee+++e+++ka+ ++ W +++ +++g++ + +++ s++++g a+ra+ +v +++ v+e+l+d+ W ++++++++l + s+g g+++l +++++ Pgl015944 166 IAEETLTEFLSKAKGNAVEWIQMPGMKPGPDAIGIVTISHGCTGVAARACSLVGIDPT-KVAEILKDRTSWLRDCRSVDVLTAFSTGngGTVELLYMQMY 264 789*****************************************************.8888888888*************************** PP TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195 a+++l++ Rdf+++Ry+ l++g++v++++S++ +q p+ +++vRae+ pSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s+++ ++k Pgl015944 265 APTTLASaRDFWTLRYTSVLEDGSLVVCERSLSGTQGGPSmpaVQHFVRAEMQPSGYLIRPCEGGGSLIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKV 364 ***********************************999899*************************************************** PP HHHHTXXXXX CS START 196 wvatlqrqce 205 ++a+l+++++ Pgl015944 365 TMAALRHLRQ 374 ***99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.758	13	77	IPR001356	Homeobox domain
SMART	SM00389	2.3E-15	15	81	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.75E-16	18	81	IPR009057	Homeodomain-like
Pfam	PF00046	6.5E-16	18	76	IPR001356	Homeobox domain
CDD	cd00086	3.97E-16	18	78	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.8E-18	20	76	IPR009057	Homeodomain-like
CDD	cd14686	1.84E-6	70	109	No hit	No description
PROSITE profile	PS50848	25.731	156	384	IPR002913	START domain
CDD	cd08875	8.25E-81	160	376	No hit	No description
Gene3D	G3DSA:3.30.530.20	4.9E-24	165	371	IPR023393	START-like domain
SuperFamily	SSF55961	4.81E-37	165	377	No hit	No description
SMART	SM00234	8.1E-37	165	375	IPR002913	START domain
Pfam	PF01852	2.0E-49	166	374	IPR002913	START domain
SuperFamily	SSF55961	4.53E-5	405	496	No hit	No description
SuperFamily	SSF55961	4.53E-5	528	608	No hit	No description
Pfam	PF08670	1.6E-51	702	844	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 845 aa Download sequence Send to blast
MAVTSSKEGK FSGMDQGKYV RYTAEQVEAL ERLYHECPKP SSIRRQQLIR ECPILSNIEP 60 KQIKVWFQNR RCREKQRKEA SRLQAVNRKL SAMNKLLMEE NDRLQKQVSQ LVYENGYFRQ 120 QLQNASIATT DTSCESVVTS VKHQQQNHLT PRDPPRDASP AGLLSIAEET LTEFLSKAKG 180 NAVEWIQMPG MKPGPDAIGI VTISHGCTGV AARACSLVGI DPTKVAEILK DRTSWLRDCR 240 SVDVLTAFST GNGGTVELLY MQMYAPTTLA SARDFWTLRY TSVLEDGSLV VCERSLSGTQ 300 GGPSMPAVQH FVRAEMQPSG YLIRPCEGGG SLIHIVDHMD LEPWSVPEVL RPLYESSTVL 360 AQKVTMAALR HLRQIAQEVS SDVVLGWGRQ PAALRTFSQR LCKGFNEAVN GFTDDGWSLM 420 GNDGMDDVTI LINSSPSKLL GQQFASSDGL PALGGGILCA KASMLLQNVP PALLVRFLRE 480 HRSEWADSNI DAYSAASWKA SPCTVPSSRI GGFGGGGQVI LPLAHTVEHE EFLEVIKLEN 540 NGLTQEEALL SRDMFLLQLC SGIDENAVGA CAELVFAPID ASLADSSPLL PSGFRVIPLD 600 SGMDGSSPNR TLDLASALEI GSAGTRTSVD YGGNSSNLRS VLTIAFQFTF ENHLRENVAT 660 MARQYVRGVV ASVQRVAMAL APSRLGSHLG PRLPPGTPEA LTLARWVCQS YRFHLGVELL 720 RPNSEVNESV LKTLWHHSDA IMCCSLKSLP IFTFANQAGL DMLETTLVAL QDISLEKILD 780 DNGRKSFCSD IAQIMQQGYA YLPAGVCVSS MGRPASYDRA IAWKVLNDEE NPHCIAFMFM 840 NWSFV

Sequence ? help Back to Top

Protein Sequence Length: 845 aa Download sequence Send to blast

MAVTSSKEGK FSGMDQGKYV RYTAEQVEAL ERLYHECPKP SSIRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKEA SRLQAVNRKL SAMNKLLMEE NDRLQKQVSQ LVYENGYFRQ  120
QLQNASIATT DTSCESVVTS VKHQQQNHLT PRDPPRDASP AGLLSIAEET LTEFLSKAKG  180
NAVEWIQMPG MKPGPDAIGI VTISHGCTGV AARACSLVGI DPTKVAEILK DRTSWLRDCR  240
SVDVLTAFST GNGGTVELLY MQMYAPTTLA SARDFWTLRY TSVLEDGSLV VCERSLSGTQ  300
GGPSMPAVQH FVRAEMQPSG YLIRPCEGGG SLIHIVDHMD LEPWSVPEVL RPLYESSTVL  360
AQKVTMAALR HLRQIAQEVS SDVVLGWGRQ PAALRTFSQR LCKGFNEAVN GFTDDGWSLM  420
GNDGMDDVTI LINSSPSKLL GQQFASSDGL PALGGGILCA KASMLLQNVP PALLVRFLRE  480
HRSEWADSNI DAYSAASWKA SPCTVPSSRI GGFGGGGQVI LPLAHTVEHE EFLEVIKLEN  540
NGLTQEEALL SRDMFLLQLC SGIDENAVGA CAELVFAPID ASLADSSPLL PSGFRVIPLD  600
SGMDGSSPNR TLDLASALEI GSAGTRTSVD YGGNSSNLRS VLTIAFQFTF ENHLRENVAT  660
MARQYVRGVV ASVQRVAMAL APSRLGSHLG PRLPPGTPEA LTLARWVCQS YRFHLGVELL  720
RPNSEVNESV LKTLWHHSDA IMCCSLKSLP IFTFANQAGL DMLETTLVAL QDISLEKILD  780
DNGRKSFCSD IAQIMQQGYA YLPAGVCVSS MGRPASYDRA IAWKVLNDEE NPHCIAFMFM  840
NWSFV

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.5916	0.0	root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Highly expressed the developing vascular elements and the adaxial portion of cotyledons. Expressed in developing ovules, stamens and carpels. Expressed in procambium and shoot meristem. {ECO:0000269\|PubMed:14701930, ECO:0000269\|PubMed:15705957}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006853643.2	0.0	homeobox-leucine zipper protein ATHB-15
Refseq	XP_020528699.1	0.0	homeobox-leucine zipper protein ATHB-15
Swissprot	Q9ZU11	0.0	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	E7DX26	0.0	E7DX26_PICGL; Class III homeodomain leucine zipper protein
STRING	ERN15110	0.0	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
C Gene family structure, expression and functional analysis of HD-Zip III genes in angiosperm and gymnosperm forest trees. BMC Plant Biol., 2010. 10: p. 273 [PMID:21143995] Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]