PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Expression |

Basic Information? help Back to Top

TF ID

Pgl015581

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

HD-ZIP

Protein Properties

Length: 316aa MW: 35555 Da PI: 7.6842

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55351400	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.6	4.2e-18	169	223	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F ++++++ +++ LAk+l+L+ rqV vWFqNrRa+ k Pgl015581 169 RKKLRLSKEQSALLEESFLEHSTLNPKQKNALAKELNLQPRQVEVWFQNRRARTK 223 778899***********************************************98 PP
2	HD-ZIP_I/II	125.5	2.5e-40	169	259	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq++lLEesF e+++L+p++K++la+eL+lqprqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk Pgl015581 169 RKKLRLSKEQSALLEESFLEHSTLNPKQKNALAKELNLQPRQVEVWFQNRRARTKLKQTEVDCEVLKRCCENLTEENRRLQKELQELR-ALK 259 69*************************************************************************************9.555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.957	165	225	IPR001356	Homeobox domain
SMART	SM00389	2.3E-16	167	229	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.49E-18	168	233	IPR009057	Homeodomain-like
CDD	cd00086	9.11E-16	169	226	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.6E-17	169	223	IPR009057	Homeodomain-like
Pfam	PF00046	2.1E-15	169	223	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	200	223	IPR017970	Homeobox, conserved site
SMART	SM00340	2.8E-21	225	268	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	1.4E-11	225	259	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MEETKNKPRG LERLKTFASD DMTGLALGVG VDLSMAMPAT PLQEDDQKSV PLRLEPLTFR 60 PIAARVXNRS GALGAVSLVH VQELPGRGNG GGDESVWGRA WSDRHESRSI PNEAEYSSVF 120 QADALRAVEN GPMVVKRERE RAFDLEAERD RTCDVSSRTS DEEEIGSTRK KLRLSKEQSA 180 LLEESFLEHS TLNPKQKNAL AKELNLQPRQ VEVWFQNRRA RTKLKQTEVD CEVLKRCCEN 240 LTEENRRLQK ELQELRALKA VPPQCVIGQD NYYMPLPATT LTMCPSCERV ATMENSRNLS 300 FSKSKISQFA QKSAAC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	167	173	TRKKLRL
2	217	225	RRARTKLKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.127	0.0	root\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024388907.1	6e-88	homeobox-leucine zipper protein HAT4-like
TrEMBL	A9NX56	1e-150	A9NX56_PICSI; Uncharacterized protein
STRING	PP1S31_269V6.1	2e-87	(Physcomitrella patens)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	3e-68	homeobox from Arabidopsis thaliana