PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl014049
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 176aa    MW: 19967.2 Da    PI: 4.8968
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S25754310PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.2e-172372255
        AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
               ++kG+r +k +g+Wv+eIr p+    +  r++lg+++t+e+Aa+a++ a  +l+g
  Pgl014049 23 QFKGIRKRK-WGKWVSEIRMPN----StGRIWLGSYDTPEKAARAYDFAVYCLRG 72
               69****999.**********93....259********************999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.8E-292282IPR001471AP2/ERF domain
SMARTSM003804.7E-312386IPR001471AP2/ERF domain
PROSITE profilePS5103221.5622380IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-202382IPR016177DNA-binding domain
CDDcd000189.44E-282382No hitNo description
PRINTSPR003677.3E-92435IPR001471AP2/ERF domain
PfamPF008474.7E-102472IPR001471AP2/ERF domain
PRINTSPR003677.3E-94662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MAKPSQNQNG HNRRENRSLK SRQFKGIRKR KWGKWVSEIR MPNSTGRIWL GSYDTPEKAA  60
RAYDFAVYCL RGSKAKFNFP HSPPEIHCVS SLSPPQIQAA AAKYAAGEFP LPSEDATFSS  120
SDLEEECGND GQEISAFWDS VLEDLDNDES LTLQDFQPLD VPMEDFGVLF QMTENW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1623811473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012486132.11e-39PREDICTED: ethylene-responsive transcription factor ERF017-like
RefseqXP_015954806.11e-39ethylene-responsive transcription factor ERF017
RefseqXP_016189045.11e-39ethylene-responsive transcription factor ERF017
RefseqXP_025644577.11e-39ethylene-responsive transcription factor ERF017
SwissprotQ9S7L52e-38ERF18_ARATH; Ethylene-responsive transcription factor ERF018
TrEMBLB8LPP62e-80B8LPP6_PICSI; Uncharacterized protein
STRINGGorai.001G019100.15e-39(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.11e-37ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Chen HY, et al.
    ORA47 (octadecanoid-responsive AP2/ERF-domain transcription factor 47) regulates jasmonic acid and abscisic acid biosynthesis and signaling through binding to a novel cis-element.
    New Phytol., 2016. 211(2): p. 599-613
    [PMID:26974851]
  4. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]