PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl012969
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family ERF
Protein Properties Length: 222aa    MW: 24799.3 Da    PI: 9.4265
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55349012PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-42239PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.56.1e-1764114255
        AP2   2 gykGVrwdkkrgrWvAeIrdpseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 
                +y+GVr+++ +g+++AeIrd       + +r+ lg+f taeeAa a+++a+ k++g
  Pgl012969  64 HYRGVRQRP-WGKFAAEIRD----SarQGARVCLGTFNTAEEAALAYDRAAYKMRG 114
                7********.**********....33334*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.6E-3063123IPR001471AP2/ERF domain
PROSITE profilePS5103221.58864122IPR001471AP2/ERF domain
CDDcd000181.97E-2864122No hitNo description
PfamPF008477.3E-1364114IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-2264123IPR016177DNA-binding domain
SMARTSM003801.0E-3364128IPR001471AP2/ERF domain
PRINTSPR003672.1E-136576IPR001471AP2/ERF domain
PRINTSPR003672.1E-13104124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MVLYGILKEA AKKGWMAVTP KEEMKTETKT KKEAEIFPVK IEPDVRQETG TQQPAAKKKY  60
AGRHYRGVRQ RPWGKFAAEI RDSARQGARV CLGTFNTAEE AALAYDRAAY KMRGSKALLN  120
FPLHAALAGN NSCTTEEKPE SNGENFLQNL TTRKRERSAS DEVESGRECR VKLEEFTREA  180
DKMSRGMVDE LLCGRMTTPP LTPSGIDMSS SNFLCPGQLM VN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-3262123364ATERF1
3gcc_A3e-3262123364ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.226170.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and at low levels in buds and leaves. Not expressed in cell culture. {ECO:0000269|PubMed:7756828}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001311965.13e-39ethylene-responsive transcription factor 2
RefseqXP_009606945.13e-39PREDICTED: ethylene-responsive transcription factor 2
RefseqXP_027917062.15e-39ethylene-responsive transcription factor 1A
SwissprotQ404792e-40ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLJ7H3961e-122J7H396_PINTB; Transcription factor 3 (Fragment)
STRINGEFJ387452e-40(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.16e-26ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]