PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Expression |

Basic Information? help Back to Top

TF ID

Pgl011491

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

Trihelix

Protein Properties

Length: 285aa MW: 32405.6 Da PI: 9.2215

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55334798	PU_unref	Unigene	View CDS
PUT-175a-Picea_glauca-9834	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	43	1.2e-13	18	105	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W + v Li+++ e+ +++ g lk ++Wee+ k++ + ++ ++ kqC+ek+++l++ryk +k++++ r s+++ ++++f++l+ Pgl011491 18 EWHPDTVARLIDGYGEKCANIK-GYLKTKDWEEIVKYVnlqcEGSKLPKTMKQCREKIDSLKRRYKLEKRRAEVRGSDHV-NWSFFEKLD 105 599***********999986.55*********999899999**********************9978887.9****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	6.7E-16	16	107	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MTSDDDEFRR ANLGSRAEWH PDTVARLIDG YGEKCANIKG YLKTKDWEEI VKYVNLQCEG 60 SKLPKTMKQC REKIDSLKRR YKLEKRRAEV RGSDHVNWSF FEKLDDIMRN LRRSGNVSEG 120 QSFEVAEALD FEGFDGDNRS DLMISKSSDK GKVCIDTSDV LLDDGMNMDS NRLTGSRRVR 180 VELQDKGKKR VHGVSDRISK RICPSPSPSP SPSPNPNLNT NPNPVRALAD ALVSFSEIYS 240 KIESAKMELF AKMNSELAKL HRKKKKNPSC SNIDCADSDR RRPPE

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.24491	0.0	stem\| vegetative bud

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D6R4F0	1e-139	A0A0D6R4F0_ARACU; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.1	2e-19	Trihelix family protein