PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl010750
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 318aa    MW: 35996.8 Da    PI: 9.1234
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-175a-Picea_glauca-41449PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM159.99.9e-50141411128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrF Ptdeel+v+yL+k+v+++++++  +i+e+d+yk++Pw+Lp+k+  +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg+dk+v++  ++ +
  Pgl010750  14 LPPGFRFYPTDEELMVHYLCKRVASQPFPI-PIIAEIDLYKFDPWQLPEKALFGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGTDKPVTAGlNRMK 112
                79****************************.88***************8888899**************************************9888999 PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                vg+kk Lvfykg+ap+g kt+ +mheyrl
  Pgl010750 113 VGVKKALVFYKGKAPRGIKTNLIMHEYRL 141
                ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-6310168IPR003441NAC domain
PROSITE profilePS5100558.97314168IPR003441NAC domain
PfamPF023654.1E-2415141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MGCKSGPNSA QINLPPGFRF YPTDEELMVH YLCKRVASQP FPIPIIAEID LYKFDPWQLP  60
EKALFGEKEW YFFSPRDRKY PNGSRPNRAA GSGYWKATGT DKPVTAGLNR MKVGVKKALV  120
FYKGKAPRGI KTNLIMHEYR LADSASKAAK RKGSIRLDDW VLCRIYEKHY ASQKAVPKES  180
NELSSCVDPE EDQYMAPVAS NSPPDMDDNK LLINLPRINS LNRINSLLKF PSREIMKMPD  240
PNYNQTEQQY SRAETDAGSN SGGQAIEYGQ NSPFWRNQQF GYNYDQMAQN PFPQQLEHMP  300
SLGANSSAFF ASLAAELL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-8311744171NO APICAL MERISTEM PROTEIN
1ut4_B9e-8311744171NO APICAL MERISTEM PROTEIN
1ut7_A9e-8311744171NO APICAL MERISTEM PROTEIN
1ut7_B9e-8311744171NO APICAL MERISTEM PROTEIN
3swm_A1e-8211747174NAC domain-containing protein 19
3swm_B1e-8211747174NAC domain-containing protein 19
3swm_C1e-8211747174NAC domain-containing protein 19
3swm_D1e-8211747174NAC domain-containing protein 19
3swp_A1e-8211747174NAC domain-containing protein 19
3swp_B1e-8211747174NAC domain-containing protein 19
3swp_C1e-8211747174NAC domain-containing protein 19
3swp_D1e-8211747174NAC domain-containing protein 19
4dul_A9e-8311744171NAC domain-containing protein 19
4dul_B9e-8311744171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.44170.0cone| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems, leaf blades and callus. Weakly expressed in developing flowers. {ECO:0000269|PubMed:10660065}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002991700.22e-89NAC domain-containing protein 72
RefseqXP_020699020.17e-90NAC domain-containing protein 68
RefseqXP_024392980.12e-89NAC transcription factor 47-like
RefseqXP_024392981.12e-89NAC transcription factor 47-like
SwissprotQ52QH41e-86NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLA9NPH40.0A9NPH4_PICSI; Uncharacterized protein
STRINGPP1S5_359V6.19e-89(Physcomitrella patens)
STRINGEFJ078411e-89(Selaginella moellendorffii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.23e-86NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]