PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl008945
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 591aa    MW: 63242.5 Da    PI: 6.2553
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55335860PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-13087PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.71.6e-11409451754
                HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
        HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  Pgl008945 409 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 451
                79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58402451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16405470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.6E-9408451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-14408457IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-16409465IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.13E-13409455No hitNo description
CDDcd048731.02E-4521580No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 591 aa     Download sequence    Send to blast
MNLNGGVWGL EDATDLHCNN DENLNLPTFK AMLDAEEWFT SHSNTSNNDI TTASINNANS  60
HPDGPCFNID MKDFGCYSSL VNPNPEPPNM LLQHAMNSCS SSPASIFSLD PSQVQSFLAG  120
GSNHHHHHHV SPFPDVAGSS PFQELACEGL VSSNNASSNS SSNSYLYGGL PGGIFRQLSP  180
SFAGSSPRTN TVTPTPNLSS PHSQMGGSST PNLSPRMMPT SNLNLSDTGL FSSSNHTTTT  240
NNNNLSNLLG LSSLMSPRIP APLNFSSPKM LRPLEICAPV GAQPTLFQKR AALRHTALSR  300
CTTTPCIEVL DEESPNGNSN SNVKGKSKLM LVGADNKEDE DVDESNDGSG VHYDSDDVGA  360
NNNSYKVDQI GEDGLASAGG TGNAAAVNNN INGGGDKGKK KGLPAKNLMA ERRRRKKLND  420
RLYMLRSVVP KISKMDRASI LGDAIEYLKE LLQKINDLHN ELESTSQGPV LPGTSNFHPL  480
TPTTPSLPCR VKEECPTSLP SPNAQPARVE VRMREGHALN IHMFCARRPG PLPSTMRALD  540
GLGLDVQQAV ISCFNGFALD VFRAEQAKEG EIAPEEIKAV LLHTASCHTA I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14404461663Transcription factor MYC2
5gnj_B2e-14404461663Transcription factor MYC2
5gnj_E2e-14404461663Transcription factor MYC2
5gnj_F2e-14404461663Transcription factor MYC2
5gnj_G2e-14404461663Transcription factor MYC2
5gnj_I2e-14404461663Transcription factor MYC2
5gnj_M2e-14404461663Transcription factor MYC2
5gnj_N2e-14404461663Transcription factor MYC2
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1398416KKKGLPAKNLMAERRRRKK
2410417ERRRRKKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.147090.0somatic embryo| vegetative bud
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010250549.11e-130PREDICTED: transcription factor ICE1
STRINGXP_010250549.11e-129(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-101bHLH family protein