PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl008851
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 672aa    MW: 75629.3 Da    PI: 6.512
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55337710PU_unrefUnigeneView CDS
PUT-175a-Picea_glauca-43865PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH469.2e-15446492455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  A+eY+k+L+
  Pgl008851 446 NHVLAERRRREKLNERFIILRTLVPFV-----TKMDKASILGDAIEYVKQLR 492
                7999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.8E-5214195IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.688442491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-19442509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.35E-15445496No hitNo description
PfamPF000102.4E-12446491IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-19446511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-18448497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MALVDFTEVP RTRLRQQMQA AVQSIQWTYS VFWQFSHPEG LLVWMDGFYN GGIKTRKTVQ  60
PMELSPEELC AQRSLQLREL FESLSAGETN PPTRRPCAAL SPEDLTESEW FYLMCMSFTF  120
APGVGLPGRA LTKRHHVWLS QANEADSKLF SRAILAKSAR IQTVACIPLA DGVLEIGSTE  180
LIREDIGLIH QVTSLLADHS KPVCSEQSTS NPHSENASRA LPPDQLSMQP PDGIVFEEQN  240
VKATEYNSDN AHENAHIPMQ VSGLQSEKTV TEFGQNGSEV MQLDMSPEDC SNDIGSELQV  300
TGGNSCMQVK HSTNAWPDIS HGLQSSGTQQ YLDQGSDDES GHYSKTVSTI LQQQRPSQWT  360
ETTTLQLVRG NINPQDITQR CAFSCWTGNG GVSVQKSMNP QWVLKYILFS VPNLHSRDRD  420
ESSPKLREGE NGCRVRRSGQ DDITVNHVLA ERRRREKLNE RFIILRTLVP FVTKMDKASI  480
LGDAIEYVKQ LRRRIQDLEV RSKQMETELK KSAEPRKQLS TTSQEKIVRQ KSGGTTNNNN  540
VDQELVSSCR NFSDHSDQQQ YKISRFEKRK IRVLERSEPL TIIDDCSTDV QVSIIEHEAL  600
VELQCPWREG LLLDIMQTLS NLLFETHSVQ SSVVNNTFVA KIRAKVKAAN IGEKPTITKV  660
KNAVLECIPS RC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-22141969192Transcription factor MYC3
4rqw_B3e-22141969192Transcription factor MYC3
4rs9_A3e-22141969192Transcription factor MYC3
4yz6_A3e-22141969192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1450455ERRRRE
2451456RRRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.214110.0needle| vegetative bud
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010255921.10.0PREDICTED: basic helix-loop-helix protein A-like
RefseqXP_010255923.10.0PREDICTED: basic helix-loop-helix protein A-like
TrEMBLA0A167V9480.0A0A167V948_PICAB; Transcription factor bHLH-1
STRINGVIT_07s0104g00090.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63650.32e-94bHLH family protein